Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.46■□□□□ 0.23
VSX1Q9NZR4 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VSX1Q9NZR4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VSX1Q9NZR4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
VSX1Q9NZR4 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VSX1Q9NZR4 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 TSPY17P-201ENST00000450329 467 ntBASIC16.45■□□□□ 0.22
VSX1Q9NZR4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 MIR4785-201ENST00000585005 73 ntBASIC16.45■□□□□ 0.22
VSX1Q9NZR4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 ESPNP-201ENST00000270691 2015 ntBASIC16.45■□□□□ 0.22
VSX1Q9NZR4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VSX1Q9NZR4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 AC036111.1-201ENST00000533973 1582 ntBASIC16.44■□□□□ 0.22
VSX1Q9NZR4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 AL353719.1-201ENST00000566847 864 ntBASIC16.44■□□□□ 0.22
VSX1Q9NZR4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VSX1Q9NZR4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms