Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
MMP28Q9H239 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.26■□□□□ 0.19
MMP28Q9H239 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 UBALD1-205ENST00000590891 2641 ntBASIC16.26■□□□□ 0.19
MMP28Q9H239 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MMP28Q9H239 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
MMP28Q9H239 AC092368.3-202ENST00000574180 1591 ntBASIC16.26■□□□□ 0.19
MMP28Q9H239 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.25■□□□□ 0.19
MMP28Q9H239 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
MMP28Q9H239 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.25■□□□□ 0.19
MMP28Q9H239 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.25■□□□□ 0.19
MMP28Q9H239 SDHAP1-207ENST00000440850 2000 ntBASIC16.25■□□□□ 0.19
MMP28Q9H239 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
MMP28Q9H239 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.25■□□□□ 0.19
MMP28Q9H239 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.25■□□□□ 0.19
MMP28Q9H239 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.25■□□□□ 0.19
MMP28Q9H239 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC16.25■□□□□ 0.19
MMP28Q9H239 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.25■□□□□ 0.19
MMP28Q9H239 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.25■□□□□ 0.19
MMP28Q9H239 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
MMP28Q9H239 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MMP28Q9H239 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.24■□□□□ 0.19
MMP28Q9H239 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
MMP28Q9H239 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.24■□□□□ 0.19
MMP28Q9H239 KRT18P29-201ENST00000397031 1267 ntBASIC16.24■□□□□ 0.19
MMP28Q9H239 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC16.24■□□□□ 0.19
MMP28Q9H239 SLC25A6P5-201ENST00000435663 894 ntBASIC16.24■□□□□ 0.19
MMP28Q9H239 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC16.24■□□□□ 0.19
MMP28Q9H239 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC16.24■□□□□ 0.19
MMP28Q9H239 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.24■□□□□ 0.19
MMP28Q9H239 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 AC008687.6-201ENST00000596318 630 ntBASIC16.24■□□□□ 0.19
MMP28Q9H239 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
MMP28Q9H239 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MMP28Q9H239 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.23■□□□□ 0.19
MMP28Q9H239 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 PCDH8P1-201ENST00000428983 2773 ntBASIC16.23■□□□□ 0.19
MMP28Q9H239 AL162727.3-201ENST00000635661 2787 ntBASIC16.23■□□□□ 0.19
MMP28Q9H239 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
MMP28Q9H239 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms