Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NUDCD3Q8IVD9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 HTR7P1-201ENST00000538670 1336 ntBASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 AC133041.1-202ENST00000642053 222 ntBASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUDCD3Q8IVD9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 AC131212.4-201ENST00000623606 975 ntBASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.3■□□□□ 0.52
NUDCD3Q8IVD9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NUDCD3Q8IVD9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NUDCD3Q8IVD9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms