Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 AL161938.1-201ENST00000569833 2180 ntBASIC15.81■□□□□ 0.12
USF3Q68DE3 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
USF3Q68DE3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
USF3Q68DE3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
USF3Q68DE3 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 KRT8P26-201ENST00000534154 1276 ntBASIC15.81■□□□□ 0.12
USF3Q68DE3 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.81■□□□□ 0.12
USF3Q68DE3 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
USF3Q68DE3 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.81■□□□□ 0.12
USF3Q68DE3 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.81■□□□□ 0.12
USF3Q68DE3 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.81■□□□□ 0.12
USF3Q68DE3 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.81■□□□□ 0.12
USF3Q68DE3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
USF3Q68DE3 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 AC104581.1-202ENST00000635932 2618 ntBASIC15.81■□□□□ 0.12
USF3Q68DE3 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.81■□□□□ 0.12
USF3Q68DE3 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
USF3Q68DE3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.8■□□□□ 0.12
USF3Q68DE3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 TOB2P1-201ENST00000469761 992 ntBASIC15.8■□□□□ 0.12
USF3Q68DE3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.8■□□□□ 0.12
USF3Q68DE3 KRT18P31-201ENST00000506277 1292 ntBASIC15.8■□□□□ 0.12
USF3Q68DE3 AP000867.3-201ENST00000524675 377 ntBASIC15.8■□□□□ 0.12
USF3Q68DE3 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC15.8■□□□□ 0.12
USF3Q68DE3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
USF3Q68DE3 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
USF3Q68DE3 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
USF3Q68DE3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC15.8■□□□□ 0.12
USF3Q68DE3 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.8■□□□□ 0.12
USF3Q68DE3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.8■□□□□ 0.12
USF3Q68DE3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 PVRIG2P-201ENST00000435460 978 ntBASIC15.8■□□□□ 0.12
USF3Q68DE3 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.8■□□□□ 0.12
USF3Q68DE3 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC15.8■□□□□ 0.12
USF3Q68DE3 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC15.8■□□□□ 0.12
USF3Q68DE3 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF3Q68DE3 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.8■□□□□ 0.12
USF3Q68DE3 AC008556.1-201ENST00000610908 2040 ntBASIC15.8■□□□□ 0.12
USF3Q68DE3 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.8■□□□□ 0.12
USF3Q68DE3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
USF3Q68DE3 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
USF3Q68DE3 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
USF3Q68DE3 FAAHP1-202ENST00000446499 1238 ntBASIC15.79■□□□□ 0.12
USF3Q68DE3 AC079781.3-201ENST00000449110 356 ntBASIC15.79■□□□□ 0.12
USF3Q68DE3 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
USF3Q68DE3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF3Q68DE3 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.79■□□□□ 0.12
USF3Q68DE3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.79■□□□□ 0.12
USF3Q68DE3 TSPY19P-201ENST00000418461 509 ntBASIC15.79■□□□□ 0.12
USF3Q68DE3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.79■□□□□ 0.12
USF3Q68DE3 TSPY18P-201ENST00000441642 509 ntBASIC15.79■□□□□ 0.12
USF3Q68DE3 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.79■□□□□ 0.12
USF3Q68DE3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.79■□□□□ 0.12
USF3Q68DE3 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC15.79■□□□□ 0.12
USF3Q68DE3 AC104692.2-201ENST00000603054 253 ntBASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms