Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 AC104109.2-201ENST00000602919 1418 ntBASIC22.48■■□□□ 1.19
CCDC88AQ3V6T2 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 NFYC-AS1-201ENST00000606277 1687 ntBASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 AC092910.1-201ENST00000482027 1129 ntBASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 AC040169.1-201ENST00000565382 521 ntBASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 AP005117.1-201ENST00000584346 1413 ntBASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC88AQ3V6T2 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 AL161938.1-201ENST00000569833 2180 ntBASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 RBM17P3-201ENST00000417687 1192 ntBASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 FIS1-203ENST00000442303 631 ntTSL 3 BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 KRT8P32-201ENST00000512863 1461 ntBASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC22.46■■□□□ 1.19
CCDC88AQ3V6T2 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 AC134684.3-201ENST00000641758 218 ntBASIC22.45■■□□□ 1.19
CCDC88AQ3V6T2 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 LBH-203ENST00000404397 543 ntTSL 4 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 MIR5100-201ENST00000579544 119 ntBASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 AC008735.5-201ENST00000623544 497 ntBASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC22.45■■□□□ 1.18
CCDC88AQ3V6T2 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 HS6ST1P1-201ENST00000481504 1234 ntBASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC88AQ3V6T2 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 AC114341.1-201ENST00000618070 349 ntBASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 AC007952.6-201ENST00000573168 2673 ntBASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 AC003957.1-201ENST00000625108 2673 ntBASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 SLC25A24-204ENST00000569674 2357 ntBASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms