Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.28■□□□□ 0.52
CXCL12P48061 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.28■□□□□ 0.52
CXCL12P48061 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 AL356309.3-201ENST00000624132 1934 ntBASIC18.28■□□□□ 0.52
CXCL12P48061 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.28■□□□□ 0.52
CXCL12P48061 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.28■□□□□ 0.52
CXCL12P48061 RPS8P6-201ENST00000426177 609 ntBASIC18.28■□□□□ 0.52
CXCL12P48061 GPX1P2-201ENST00000429271 606 ntBASIC18.28■□□□□ 0.52
CXCL12P48061 DNAJB3-201ENST00000446806 729 ntBASIC18.28■□□□□ 0.52
CXCL12P48061 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.28■□□□□ 0.52
CXCL12P48061 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.28■□□□□ 0.52
CXCL12P48061 AP001160.2-201ENST00000596071 487 ntBASIC18.28■□□□□ 0.52
CXCL12P48061 AL138831.2-201ENST00000606564 490 ntBASIC18.28■□□□□ 0.52
CXCL12P48061 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL12P48061 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CXCL12P48061 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CXCL12P48061 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.27■□□□□ 0.52
CXCL12P48061 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CXCL12P48061 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CXCL12P48061 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CXCL12P48061 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.27■□□□□ 0.52
CXCL12P48061 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.27■□□□□ 0.52
CXCL12P48061 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.27■□□□□ 0.52
CXCL12P48061 MTCL1P1-201ENST00000446207 792 ntBASIC18.27■□□□□ 0.52
CXCL12P48061 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.27■□□□□ 0.52
CXCL12P48061 RNA5SP415-201ENST00000517246 115 ntBASIC18.27■□□□□ 0.52
CXCL12P48061 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CXCL12P48061 AC009154.2-201ENST00000621177 724 ntBASIC18.27■□□□□ 0.52
CXCL12P48061 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
CXCL12P48061 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL12P48061 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
CXCL12P48061 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
CXCL12P48061 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CXCL12P48061 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CXCL12P48061 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CXCL12P48061 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CXCL12P48061 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CXCL12P48061 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CXCL12P48061 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CXCL12P48061 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.26■□□□□ 0.51
CXCL12P48061 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CXCL12P48061 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CXCL12P48061 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.26■□□□□ 0.51
CXCL12P48061 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 YBX2P1-201ENST00000394192 760 ntBASIC18.26■□□□□ 0.51
CXCL12P48061 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 AC112482.1-201ENST00000492080 688 ntBASIC18.26■□□□□ 0.51
CXCL12P48061 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.26■□□□□ 0.51
CXCL12P48061 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.26■□□□□ 0.51
CXCL12P48061 AC040169.1-201ENST00000565382 521 ntBASIC18.26■□□□□ 0.51
CXCL12P48061 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CXCL12P48061 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CXCL12P48061 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.26■□□□□ 0.51
CXCL12P48061 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CXCL12P48061 AC009102.3-201ENST00000623118 1491 ntBASIC18.26■□□□□ 0.51
CXCL12P48061 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CXCL12P48061 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.25■□□□□ 0.51
CXCL12P48061 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.25■□□□□ 0.51
CXCL12P48061 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms