Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SCN4AP35499 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SCN4AP35499 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
SCN4AP35499 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.71■■□□□ 1.07
SCN4AP35499 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
SCN4AP35499 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SCN4AP35499 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SCN4AP35499 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.7■■□□□ 1.06
SCN4AP35499 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SCN4AP35499 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SCN4AP35499 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SCN4AP35499 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.7■■□□□ 1.06
SCN4AP35499 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SCN4AP35499 WBP2-203ENST00000433525 928 ntTSL 2 BASIC21.7■■□□□ 1.06
SCN4AP35499 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.7■■□□□ 1.06
SCN4AP35499 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.7■■□□□ 1.06
SCN4AP35499 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.7■■□□□ 1.06
SCN4AP35499 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.7■■□□□ 1.06
SCN4AP35499 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.7■■□□□ 1.06
SCN4AP35499 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
SCN4AP35499 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SCN4AP35499 AL024508.2-201ENST00000607749 1894 ntBASIC21.7■■□□□ 1.06
SCN4AP35499 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
SCN4AP35499 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.7■■□□□ 1.06
SCN4AP35499 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 AC136632.2-201ENST00000512891 861 ntBASIC21.69■■□□□ 1.06
SCN4AP35499 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.69■■□□□ 1.06
SCN4AP35499 SDCCAG3P1-201ENST00000589292 1150 ntBASIC21.69■■□□□ 1.06
SCN4AP35499 AC007375.3-201ENST00000600936 2314 ntBASIC21.69■■□□□ 1.06
SCN4AP35499 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.69■■□□□ 1.06
SCN4AP35499 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 FP475955.4-201ENST00000623131 1990 ntBASIC21.69■■□□□ 1.06
SCN4AP35499 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
SCN4AP35499 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.69■■□□□ 1.06
SCN4AP35499 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.69■■□□□ 1.06
SCN4AP35499 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.69■■□□□ 1.06
SCN4AP35499 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.69■■□□□ 1.06
SCN4AP35499 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.69■■□□□ 1.06
SCN4AP35499 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
SCN4AP35499 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SCN4AP35499 AP000344.2-201ENST00000512987 629 ntBASIC21.69■■□□□ 1.06
SCN4AP35499 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 AC106028.4-201ENST00000614509 607 ntBASIC21.69■■□□□ 1.06
SCN4AP35499 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN4AP35499 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN4AP35499 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN4AP35499 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN4AP35499 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.68■■□□□ 1.06
SCN4AP35499 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN4AP35499 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN4AP35499 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SCN4AP35499 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
SCN4AP35499 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN4AP35499 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SCN4AP35499 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN4AP35499 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.68■■□□□ 1.06
SCN4AP35499 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SCN4AP35499 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.68■■□□□ 1.06
SCN4AP35499 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.68■■□□□ 1.06
SCN4AP35499 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN4AP35499 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN4AP35499 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
SCN4AP35499 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN4AP35499 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN4AP35499 IRX1P1-201ENST00000438849 1838 ntBASIC21.68■■□□□ 1.06
SCN4AP35499 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SCN4AP35499 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SCN4AP35499 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC21.67■■□□□ 1.06
SCN4AP35499 PRSS29P-201ENST00000440800 595 ntBASIC21.67■■□□□ 1.06
SCN4AP35499 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC21.67■■□□□ 1.06
SCN4AP35499 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.67■■□□□ 1.06
SCN4AP35499 AC092865.6-201ENST00000642101 219 ntBASIC21.67■■□□□ 1.06
SCN4AP35499 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SCN4AP35499 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCN4AP35499 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCN4AP35499 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
SCN4AP35499 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SCN4AP35499 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.66■■□□□ 1.06
SCN4AP35499 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.66■■□□□ 1.06
SCN4AP35499 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms