Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Col12a1Q60847 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Col12a1Q60847 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Col12a1Q60847 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Col12a1Q60847 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC23.42■■□□□ 1.34
Col12a1Q60847 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
Col12a1Q60847 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC23.4■■□□□ 1.34
Col12a1Q60847 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC23.4■■□□□ 1.34
Col12a1Q60847 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Col12a1Q60847 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
Col12a1Q60847 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Col12a1Q60847 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC23.37■■□□□ 1.33
Col12a1Q60847 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Col12a1Q60847 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
Col12a1Q60847 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Col12a1Q60847 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Col12a1Q60847 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Col12a1Q60847 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Col12a1Q60847 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Col12a1Q60847 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Col12a1Q60847 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Col12a1Q60847 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC23.35■■□□□ 1.33
Col12a1Q60847 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Col12a1Q60847 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Col12a1Q60847 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Col12a1Q60847 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col12a1Q60847 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Col12a1Q60847 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Col12a1Q60847 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Col12a1Q60847 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
Col12a1Q60847 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Col12a1Q60847 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC23.33■■□□□ 1.33
Col12a1Q60847 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Col12a1Q60847 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Col12a1Q60847 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col12a1Q60847 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col12a1Q60847 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC23.32■■□□□ 1.32
Col12a1Q60847 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col12a1Q60847 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.32■■□□□ 1.32
Col12a1Q60847 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Col12a1Q60847 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col12a1Q60847 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col12a1Q60847 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Col12a1Q60847 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col12a1Q60847 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
Col12a1Q60847 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC23.31■■□□□ 1.32
Col12a1Q60847 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col12a1Q60847 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Col12a1Q60847 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Col12a1Q60847 Gm42501-201ENSMUST00000200220 1026 ntBASIC23.29■■□□□ 1.32
Col12a1Q60847 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col12a1Q60847 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Col12a1Q60847 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Col12a1Q60847 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col12a1Q60847 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col12a1Q60847 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.28■■□□□ 1.32
Col12a1Q60847 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col12a1Q60847 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC23.27■■□□□ 1.32
Col12a1Q60847 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col12a1Q60847 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.26■■□□□ 1.31
Col12a1Q60847 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col12a1Q60847 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC23.26■■□□□ 1.31
Col12a1Q60847 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Col12a1Q60847 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Col12a1Q60847 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Col12a1Q60847 Etf1-202ENSMUST00000180351 108 ntBASIC23.25■■□□□ 1.31
Col12a1Q60847 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col12a1Q60847 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col12a1Q60847 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
Col12a1Q60847 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC23.24■■□□□ 1.31
Col12a1Q60847 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col12a1Q60847 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
Col12a1Q60847 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col12a1Q60847 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC23.22■■□□□ 1.31
Col12a1Q60847 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Col12a1Q60847 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC23.22■■□□□ 1.31
Col12a1Q60847 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col12a1Q60847 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC23.21■■□□□ 1.31
Col12a1Q60847 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Col12a1Q60847 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col12a1Q60847 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC23.2■■□□□ 1.3
Col12a1Q60847 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col12a1Q60847 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col12a1Q60847 Gm21956-201ENSMUST00000179946 522 ntBASIC23.19■■□□□ 1.3
Col12a1Q60847 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Col12a1Q60847 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
Col12a1Q60847 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
Col12a1Q60847 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col12a1Q60847 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Col12a1Q60847 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col12a1Q60847 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Col12a1Q60847 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Col12a1Q60847 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.17■■□□□ 1.3
Col12a1Q60847 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
Col12a1Q60847 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col12a1Q60847 Terc-201ENSMUST00000082862 423 ntBASIC23.17■■□□□ 1.3
Col12a1Q60847 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col12a1Q60847 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col12a1Q60847 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col12a1Q60847 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC23.16■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms