Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 MED16-201ENST00000269814 1199 ntTSL 5 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 MIR149-201ENST00000384879 89 ntBASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 HIST2H3DP1-201ENST00000401004 416 ntBASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 GZMM-202ENST00000592501 941 ntTSL 3 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 AC008687.5-201ENST00000593746 558 ntBASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 AC112777.1-201ENST00000540175 1423 ntBASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTFDC1Q9BY42 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 AC073648.2-201ENST00000510116 352 ntBASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 PAN3-AS1-201ENST00000563843 1351 ntBASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 PKD1P6-201ENST00000343738 4769 ntBASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTFDC1Q9BY42 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 AC092183.1-201ENST00000469884 875 ntBASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 AC092865.5-201ENST00000545435 363 ntBASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 COX5A-204ENST00000567270 579 ntTSL 3 BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 AP001269.4-201ENST00000609611 512 ntBASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 AC116407.3-201ENST00000623905 1129 ntBASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC22.34■■□□□ 1.17
RTFDC1Q9BY42 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 MIR1233-2-201ENST00000408138 82 ntBASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 MIR1233-1-201ENST00000408722 82 ntBASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 MTDHP3-201ENST00000594186 672 ntBASIC22.33■■□□□ 1.17
RTFDC1Q9BY42 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC22.33■■□□□ 1.16
RTFDC1Q9BY42 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC22.33■■□□□ 1.16
RTFDC1Q9BY42 INTS4P1-201ENST00000438455 1935 ntBASIC22.33■■□□□ 1.16
RTFDC1Q9BY42 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RTFDC1Q9BY42 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RTFDC1Q9BY42 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 DANCR-204ENST00000444958 709 ntTSL 3 BASIC22.32■■□□□ 1.16
RTFDC1Q9BY42 AC009533.2-201ENST00000543664 586 ntBASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms