Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
ABCA4P78363 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 MTMR9LP-203ENST00000426597 1545 ntBASIC15.86■□□□□ 0.13
ABCA4P78363 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.85■□□□□ 0.13
ABCA4P78363 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.85■□□□□ 0.13
ABCA4P78363 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.85■□□□□ 0.13
ABCA4P78363 TP73-AS1-207ENST00000624167 988 ntBASIC15.85■□□□□ 0.13
ABCA4P78363 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
ABCA4P78363 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.85■□□□□ 0.13
ABCA4P78363 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 FEM1AP3-201ENST00000403722 1741 ntBASIC15.85■□□□□ 0.13
ABCA4P78363 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
ABCA4P78363 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
ABCA4P78363 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
ABCA4P78363 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA4P78363 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA4P78363 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
ABCA4P78363 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA4P78363 SAPCD2P3-201ENST00000455031 850 ntBASIC15.84■□□□□ 0.13
ABCA4P78363 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC15.84■□□□□ 0.13
ABCA4P78363 AC099336.1-202ENST00000602961 463 ntBASIC15.84■□□□□ 0.13
ABCA4P78363 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
ABCA4P78363 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
ABCA4P78363 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
ABCA4P78363 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA4P78363 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
ABCA4P78363 KRT8P50-201ENST00000562022 1438 ntBASIC15.84■□□□□ 0.13
ABCA4P78363 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.84■□□□□ 0.13
ABCA4P78363 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.84■□□□□ 0.13
ABCA4P78363 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA4P78363 AL139424.1-201ENST00000607572 797 ntBASIC15.84■□□□□ 0.13
ABCA4P78363 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA4P78363 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.84■□□□□ 0.13
ABCA4P78363 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA4P78363 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA4P78363 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA4P78363 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA4P78363 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA4P78363 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
ABCA4P78363 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA4P78363 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA4P78363 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA4P78363 AKR1C7P-201ENST00000305623 895 ntBASIC15.83■□□□□ 0.13
ABCA4P78363 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.83■□□□□ 0.13
ABCA4P78363 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC15.83■□□□□ 0.13
ABCA4P78363 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA4P78363 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
ABCA4P78363 AC124864.1-201ENST00000623408 392 ntBASIC15.83■□□□□ 0.13
ABCA4P78363 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA4P78363 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
ABCA4P78363 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA4P78363 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms