Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A4P53420 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.69■□□□□ 0.74
COL4A4P53420 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A4P53420 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A4P53420 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A4P53420 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A4P53420 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A4P53420 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A4P53420 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A4P53420 HEIH-201ENST00000623091 1652 ntBASIC19.69■□□□□ 0.74
COL4A4P53420 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL4A4P53420 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL4A4P53420 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL4A4P53420 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
COL4A4P53420 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 AL353692.3-201ENST00000407031 1396 ntBASIC19.68■□□□□ 0.74
COL4A4P53420 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A4P53420 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A4P53420 HNRNPDP1-201ENST00000439535 754 ntBASIC19.68■□□□□ 0.74
COL4A4P53420 SCARNA2-201ENST00000458748 420 ntBASIC19.68■□□□□ 0.74
COL4A4P53420 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 AC093909.1-201ENST00000504731 1122 ntBASIC19.68■□□□□ 0.74
COL4A4P53420 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A4P53420 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A4P53420 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A4P53420 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A4P53420 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A4P53420 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL4A4P53420 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL4A4P53420 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A4P53420 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
COL4A4P53420 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A4P53420 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A4P53420 GGCT-205ENST00000409436 954 ntTSL 3 BASIC19.67■□□□□ 0.74
COL4A4P53420 MED15P5-201ENST00000423150 992 ntBASIC19.67■□□□□ 0.74
COL4A4P53420 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.67■□□□□ 0.74
COL4A4P53420 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.67■□□□□ 0.74
COL4A4P53420 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
COL4A4P53420 AC114341.1-201ENST00000618070 349 ntBASIC19.67■□□□□ 0.74
COL4A4P53420 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A4P53420 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL4A4P53420 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A4P53420 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.67■□□□□ 0.74
COL4A4P53420 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.67■□□□□ 0.74
COL4A4P53420 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.67■□□□□ 0.74
COL4A4P53420 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL4A4P53420 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A4P53420 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.66■□□□□ 0.74
COL4A4P53420 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A4P53420 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A4P53420 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.66■□□□□ 0.74
COL4A4P53420 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 AL512353.2-201ENST00000448759 1962 ntBASIC19.66■□□□□ 0.74
COL4A4P53420 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A4P53420 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 KRT8P32-201ENST00000512863 1461 ntBASIC19.66■□□□□ 0.74
COL4A4P53420 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL4A4P53420 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL4A4P53420 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A4P53420 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A4P53420 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A4P53420 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms