Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.36■□□□□ 0.37
SOX3P41225 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 AK4P3-201ENST00000418260 669 ntBASIC17.36■□□□□ 0.37
SOX3P41225 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX3P41225 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SOX3P41225 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.36■□□□□ 0.37
SOX3P41225 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SOX3P41225 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX3P41225 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.36■□□□□ 0.37
SOX3P41225 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SOX3P41225 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX3P41225 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX3P41225 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SOX3P41225 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SOX3P41225 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 AL023284.2-201ENST00000405850 579 ntBASIC17.35■□□□□ 0.37
SOX3P41225 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 COX11P1-201ENST00000489116 835 ntBASIC17.35■□□□□ 0.37
SOX3P41225 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.35■□□□□ 0.37
SOX3P41225 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.35■□□□□ 0.37
SOX3P41225 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.35■□□□□ 0.37
SOX3P41225 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.35■□□□□ 0.37
SOX3P41225 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SOX3P41225 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SOX3P41225 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 AL354751.1-201ENST00000412768 1863 ntBASIC17.35■□□□□ 0.37
SOX3P41225 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 BICD1-207ENST00000551848 1962 ntBASIC17.35■□□□□ 0.37
SOX3P41225 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX3P41225 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SOX3P41225 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SOX3P41225 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SOX3P41225 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.34■□□□□ 0.37
SOX3P41225 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SOX3P41225 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SOX3P41225 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.34■□□□□ 0.37
SOX3P41225 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.34■□□□□ 0.37
SOX3P41225 AC009947.2-201ENST00000444014 672 ntBASIC17.34■□□□□ 0.37
SOX3P41225 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms