Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.28■□□□□ 0.36
CACNA1AO00555 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.28■□□□□ 0.36
CACNA1AO00555 RN7SL692P-201ENST00000464677 288 ntBASIC17.28■□□□□ 0.36
CACNA1AO00555 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.28■□□□□ 0.36
CACNA1AO00555 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CACNA1AO00555 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.28■□□□□ 0.36
CACNA1AO00555 AC006333.2-201ENST00000607957 2099 ntBASIC17.28■□□□□ 0.36
CACNA1AO00555 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CACNA1AO00555 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CACNA1AO00555 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.27■□□□□ 0.36
CACNA1AO00555 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.27■□□□□ 0.36
CACNA1AO00555 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.27■□□□□ 0.36
CACNA1AO00555 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.27■□□□□ 0.36
CACNA1AO00555 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.27■□□□□ 0.36
CACNA1AO00555 CASP16P-204ENST00000635032 809 ntBASIC17.27■□□□□ 0.36
CACNA1AO00555 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CACNA1AO00555 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CACNA1AO00555 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CACNA1AO00555 AC092720.2-201ENST00000602388 1665 ntBASIC17.27■□□□□ 0.36
CACNA1AO00555 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CACNA1AO00555 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CACNA1AO00555 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CACNA1AO00555 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.27■□□□□ 0.36
CACNA1AO00555 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.27■□□□□ 0.36
CACNA1AO00555 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CACNA1AO00555 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.27■□□□□ 0.36
CACNA1AO00555 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.27■□□□□ 0.36
CACNA1AO00555 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CACNA1AO00555 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CACNA1AO00555 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.27■□□□□ 0.35
CACNA1AO00555 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.27■□□□□ 0.35
CACNA1AO00555 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.26■□□□□ 0.35
CACNA1AO00555 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 FAM58CP-201ENST00000435741 640 ntBASIC17.26■□□□□ 0.35
CACNA1AO00555 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.26■□□□□ 0.35
CACNA1AO00555 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.26■□□□□ 0.35
CACNA1AO00555 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.26■□□□□ 0.35
CACNA1AO00555 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.26■□□□□ 0.35
CACNA1AO00555 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CACNA1AO00555 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC17.26■□□□□ 0.35
CACNA1AO00555 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.26■□□□□ 0.35
CACNA1AO00555 U91328.1-201ENST00000437528 223 ntBASIC17.26■□□□□ 0.35
CACNA1AO00555 CNN2P2-201ENST00000443536 909 ntBASIC17.26■□□□□ 0.35
CACNA1AO00555 CNN2P3-201ENST00000450201 906 ntBASIC17.26■□□□□ 0.35
CACNA1AO00555 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.26■□□□□ 0.35
CACNA1AO00555 AL136317.3-201ENST00000618497 906 ntBASIC17.26■□□□□ 0.35
CACNA1AO00555 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CACNA1AO00555 AL049796.1-201ENST00000565336 1766 ntBASIC17.26■□□□□ 0.35
CACNA1AO00555 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.26■□□□□ 0.35
CACNA1AO00555 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CACNA1AO00555 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.25■□□□□ 0.35
CACNA1AO00555 ADH5P3-201ENST00000433842 1137 ntBASIC17.25■□□□□ 0.35
CACNA1AO00555 RPS2P32-201ENST00000439199 892 ntBASIC17.25■□□□□ 0.35
CACNA1AO00555 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.25■□□□□ 0.35
CACNA1AO00555 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.25■□□□□ 0.35
CACNA1AO00555 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.25■□□□□ 0.35
CACNA1AO00555 KRT19P2-202ENST00000557173 1012 ntBASIC17.25■□□□□ 0.35
CACNA1AO00555 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.25■□□□□ 0.35
CACNA1AO00555 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.25■□□□□ 0.35
CACNA1AO00555 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CACNA1AO00555 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
CACNA1AO00555 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.25■□□□□ 0.35
CACNA1AO00555 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.25■□□□□ 0.35
CACNA1AO00555 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CACNA1AO00555 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.25■□□□□ 0.35
CACNA1AO00555 RN7SL190P-201ENST00000582519 257 ntBASIC17.25■□□□□ 0.35
CACNA1AO00555 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.25■□□□□ 0.35
CACNA1AO00555 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CACNA1AO00555 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.25■□□□□ 0.35
CACNA1AO00555 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms