Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC026396.1-201ENST00000419388 421 ntBASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 AL121894.2-201ENST00000602977 491 ntBASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.1■□□□□ 0.49
TMX2-CTNND1H3BSU7 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.09■□□□□ 0.49
TMX2-CTNND1H3BSU7 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TMX2-CTNND1H3BSU7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TMX2-CTNND1H3BSU7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TMX2-CTNND1H3BSU7 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TMX2-CTNND1H3BSU7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
TMX2-CTNND1H3BSU7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.08■□□□□ 0.49
TMX2-CTNND1H3BSU7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 MCCD1P1-208ENST00000445732 328 ntBASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 MIR3652-201ENST00000579335 131 ntBASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 MIR3180-5-201ENST00000583743 153 ntBASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 AL121672.3-201ENST00000608644 468 ntBASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC139713.2-201ENST00000641328 2723 ntBASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TMX2-CTNND1H3BSU7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC135050.7-201ENST00000624508 2218 ntBASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC099398.1-201ENST00000567919 2776 ntBASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TMX2-CTNND1H3BSU7 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms