Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 AC063926.2-201ENST00000623766 1308 ntBASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 AC002310.6-201ENST00000624451 1377 ntBASIC21.86■■□□□ 1.09
SMC1BQ8NDV3 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 C20orf181-201ENST00000623918 480 ntBASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SMC1BQ8NDV3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 AC034236.2-201ENST00000606662 1610 ntBASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 GK-202ENST00000378941 458 ntTSL 3 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 MTDHP4-201ENST00000600287 670 ntBASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 AC093028.1-201ENST00000622998 982 ntBASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SMC1BQ8NDV3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC21.83■■□□□ 1.09
SMC1BQ8NDV3 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SMC1BQ8NDV3 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.83■■□□□ 1.08
SMC1BQ8NDV3 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SMC1BQ8NDV3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 AL512353.2-201ENST00000448759 1962 ntBASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 AF228730.6-201ENST00000641497 218 ntBASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 AC084121.3-201ENST00000641716 218 ntBASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms