Protein–RNA interactions for Protein: Q8IUD6

RNF135, E3 ubiquitin-protein ligase RNF135, humanhuman

Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF135Q8IUD6 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 AKR1C7P-201ENST00000305623 895 ntBASIC19.55■□□□□ 0.72
RNF135Q8IUD6 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 AL391807.1-203ENST00000604392 2365 ntBASIC19.55■□□□□ 0.72
RNF135Q8IUD6 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF135Q8IUD6 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 AC099336.1-202ENST00000602961 463 ntBASIC19.54■□□□□ 0.72
RNF135Q8IUD6 AL157888.1-201ENST00000631930 593 ntBASIC19.54■□□□□ 0.72
RNF135Q8IUD6 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF135Q8IUD6 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 LINC00167-201ENST00000530583 1419 ntBASIC19.53■□□□□ 0.72
RNF135Q8IUD6 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 RNA5SP419-201ENST00000515908 135 ntBASIC19.53■□□□□ 0.72
RNF135Q8IUD6 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
RNF135Q8IUD6 AC005332.7-201ENST00000614046 2005 ntBASIC19.52■□□□□ 0.72
RNF135Q8IUD6 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.52■□□□□ 0.72
RNF135Q8IUD6 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 SAPCD2P3-201ENST00000455031 850 ntBASIC19.52■□□□□ 0.72
RNF135Q8IUD6 SEC1P-202ENST00000473944 940 ntBASIC19.52■□□□□ 0.72
RNF135Q8IUD6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
RNF135Q8IUD6 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms