Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC24.56■■□□□ 1.52
USP54Q70EL1 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC24.56■■□□□ 1.52
USP54Q70EL1 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC24.56■■□□□ 1.52
USP54Q70EL1 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC24.56■■□□□ 1.52
USP54Q70EL1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC24.56■■□□□ 1.52
USP54Q70EL1 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC24.56■■□□□ 1.52
USP54Q70EL1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC24.56■■□□□ 1.52
USP54Q70EL1 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC24.56■■□□□ 1.52
USP54Q70EL1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP54Q70EL1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP54Q70EL1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC24.56■■□□□ 1.52
USP54Q70EL1 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP54Q70EL1 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP54Q70EL1 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP54Q70EL1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC24.56■■□□□ 1.52
USP54Q70EL1 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP54Q70EL1 AL031284.1-201ENST00000419297 478 ntBASIC24.56■■□□□ 1.52
USP54Q70EL1 DANCR-204ENST00000444958 709 ntTSL 3 BASIC24.56■■□□□ 1.52
USP54Q70EL1 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP54Q70EL1 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP54Q70EL1 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP54Q70EL1 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP54Q70EL1 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC24.55■■□□□ 1.52
USP54Q70EL1 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP54Q70EL1 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC24.55■■□□□ 1.52
USP54Q70EL1 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
USP54Q70EL1 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC24.55■■□□□ 1.52
USP54Q70EL1 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP54Q70EL1 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP54Q70EL1 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP54Q70EL1 FAM197Y8-203ENST00000450145 560 ntBASIC24.55■■□□□ 1.52
USP54Q70EL1 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC24.55■■□□□ 1.52
USP54Q70EL1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC24.55■■□□□ 1.52
USP54Q70EL1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP54Q70EL1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC24.55■■□□□ 1.52
USP54Q70EL1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC24.54■■□□□ 1.52
USP54Q70EL1 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP54Q70EL1 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
USP54Q70EL1 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP54Q70EL1 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC24.54■■□□□ 1.52
USP54Q70EL1 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC24.54■■□□□ 1.52
USP54Q70EL1 LINC01126-201ENST00000623515 1646 ntBASIC24.54■■□□□ 1.52
USP54Q70EL1 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP54Q70EL1 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP54Q70EL1 AC125634.1-201ENST00000438758 1403 ntBASIC24.54■■□□□ 1.52
USP54Q70EL1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP54Q70EL1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
USP54Q70EL1 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP54Q70EL1 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
USP54Q70EL1 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 THAP5-204ENST00000438865 868 ntTSL 2 BASIC24.53■■□□□ 1.52
USP54Q70EL1 KRT18P65-201ENST00000439811 1286 ntBASIC24.53■■□□□ 1.52
USP54Q70EL1 SCARNA2-201ENST00000458748 420 ntBASIC24.53■■□□□ 1.52
USP54Q70EL1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 AL499627.1-201ENST00000569373 2188 ntBASIC24.53■■□□□ 1.52
USP54Q70EL1 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC24.53■■□□□ 1.52
USP54Q70EL1 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC24.53■■□□□ 1.52
USP54Q70EL1 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 TP73-AS1-210ENST00000637775 1455 ntBASIC24.53■■□□□ 1.52
USP54Q70EL1 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.53■■□□□ 1.52
USP54Q70EL1 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC24.53■■□□□ 1.52
USP54Q70EL1 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.53■■□□□ 1.52
USP54Q70EL1 SNCG-201ENST00000348795 684 ntTSL 2 BASIC24.53■■□□□ 1.52
USP54Q70EL1 MIR574-201ENST00000385209 96 ntBASIC24.53■■□□□ 1.52
USP54Q70EL1 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC24.53■■□□□ 1.52
USP54Q70EL1 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC24.53■■□□□ 1.52
USP54Q70EL1 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC24.53■■□□□ 1.52
USP54Q70EL1 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
USP54Q70EL1 ABBA01031661.1-201ENST00000634362 1253 ntBASIC24.53■■□□□ 1.52
USP54Q70EL1 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP54Q70EL1 ANO7L1-203ENST00000602586 1720 ntBASIC24.52■■□□□ 1.52
USP54Q70EL1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC24.52■■□□□ 1.52
USP54Q70EL1 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP54Q70EL1 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP54Q70EL1 COBL-210ENST00000632460 1941 ntTSL 5 BASIC24.52■■□□□ 1.52
USP54Q70EL1 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP54Q70EL1 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC24.52■■□□□ 1.52
USP54Q70EL1 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC24.52■■□□□ 1.52
USP54Q70EL1 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
USP54Q70EL1 AF186996.4-201ENST00000467186 377 ntBASIC24.52■■□□□ 1.52
USP54Q70EL1 IGHV3-22-201ENST00000520721 359 ntBASIC24.52■■□□□ 1.52
USP54Q70EL1 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC24.52■■□□□ 1.52
USP54Q70EL1 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
USP54Q70EL1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP54Q70EL1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP54Q70EL1 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
USP54Q70EL1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP54Q70EL1 AC005332.7-201ENST00000614046 2005 ntBASIC24.51■■□□□ 1.51
USP54Q70EL1 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms