Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CCDC40Q4G0X9 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC40Q4G0X9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 AC018470.1-201ENST00000624790 3129 ntBASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 UNC93B2-201ENST00000285383 730 ntBASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 AP005242.2-201ENST00000580065 1175 ntBASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 MIR4785-201ENST00000585005 73 ntBASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC40Q4G0X9 MYLKP1-201ENST00000509077 1580 ntBASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 MIR564-202ENST00000385049 94 ntBASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 RBM17P1-201ENST00000453646 1190 ntBASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC40Q4G0X9 AC005332.8-201ENST00000622750 2735 ntBASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 ABALON-201ENST00000629058 1903 ntBASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 AP006294.2-201ENST00000641667 209 ntBASIC20.33■□□□□ 0.85
CCDC40Q4G0X9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 LTB4R2-202ENST00000528054 3092 ntBASIC20.33■□□□□ 0.84
CCDC40Q4G0X9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms