Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 AC092597.1-201ENST00000487352 616 ntBASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 GPALPP1-207ENST00000611650 899 ntBASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SH3RF1Q7Z6J0 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 AL645929.1-201ENST00000420084 975 ntBASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.19■□□□□ 0.98
SH3RF1Q7Z6J0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 AC009078.2-202ENST00000463353 338 ntBASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 AC023511.2-201ENST00000618803 211 ntBASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 HEIH-201ENST00000623091 1652 ntBASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SH3RF1Q7Z6J0 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 MIR4674-201ENST00000582457 87 ntBASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 AC006538.3-201ENST00000612495 578 ntBASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 AC068587.9-201ENST00000641814 219 ntBASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 AC016734.2-201ENST00000624325 1377 ntBASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 MTMR9LP-203ENST00000426597 1545 ntBASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms