Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.92■□□□□ 0.14
ABCA4P78363 AC090616.6-201ENST00000582640 721 ntBASIC15.92■□□□□ 0.14
ABCA4P78363 AL353801.3-201ENST00000609898 542 ntBASIC15.92■□□□□ 0.14
ABCA4P78363 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.92■□□□□ 0.14
ABCA4P78363 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC15.91■□□□□ 0.14
ABCA4P78363 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.91■□□□□ 0.14
ABCA4P78363 FOSL1P1-201ENST00000511041 816 ntBASIC15.91■□□□□ 0.14
ABCA4P78363 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.91■□□□□ 0.14
ABCA4P78363 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.91■□□□□ 0.14
ABCA4P78363 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC15.91■□□□□ 0.14
ABCA4P78363 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA4P78363 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA4P78363 AC005332.3-201ENST00000589904 676 ntBASIC15.91■□□□□ 0.14
ABCA4P78363 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.91■□□□□ 0.14
ABCA4P78363 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.91■□□□□ 0.14
ABCA4P78363 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
ABCA4P78363 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.9■□□□□ 0.14
ABCA4P78363 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.9■□□□□ 0.14
ABCA4P78363 KRT89P-201ENST00000620027 1478 ntBASIC15.9■□□□□ 0.14
ABCA4P78363 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.9■□□□□ 0.14
ABCA4P78363 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
ABCA4P78363 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
ABCA4P78363 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 AF238378.1-201ENST00000526806 358 ntBASIC15.9■□□□□ 0.14
ABCA4P78363 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.9■□□□□ 0.14
ABCA4P78363 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.9■□□□□ 0.14
ABCA4P78363 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.9■□□□□ 0.14
ABCA4P78363 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.9■□□□□ 0.14
ABCA4P78363 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
ABCA4P78363 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ABCA4P78363 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC15.89■□□□□ 0.13
ABCA4P78363 AL031284.1-201ENST00000419297 478 ntBASIC15.89■□□□□ 0.13
ABCA4P78363 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.89■□□□□ 0.13
ABCA4P78363 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
ABCA4P78363 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
ABCA4P78363 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.89■□□□□ 0.13
ABCA4P78363 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ABCA4P78363 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
ABCA4P78363 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.89■□□□□ 0.13
ABCA4P78363 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 UBQLN4P1-201ENST00000461599 1801 ntBASIC15.89■□□□□ 0.13
ABCA4P78363 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
ABCA4P78363 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
ABCA4P78363 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ABCA4P78363 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.89■□□□□ 0.13
ABCA4P78363 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.89■□□□□ 0.13
ABCA4P78363 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms