Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.77■□□□□ 0.76
COL4A4P53420 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.77■□□□□ 0.76
COL4A4P53420 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.77■□□□□ 0.76
COL4A4P53420 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL4A4P53420 GUSBP12-201ENST00000513727 720 ntBASIC19.77■□□□□ 0.76
COL4A4P53420 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.77■□□□□ 0.76
COL4A4P53420 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.77■□□□□ 0.76
COL4A4P53420 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.77■□□□□ 0.76
COL4A4P53420 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.77■□□□□ 0.75
COL4A4P53420 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL4A4P53420 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.77■□□□□ 0.75
COL4A4P53420 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.77■□□□□ 0.75
COL4A4P53420 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL4A4P53420 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 AL049812.1-201ENST00000432563 2267 ntBASIC19.76■□□□□ 0.75
COL4A4P53420 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A4P53420 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A4P53420 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
COL4A4P53420 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.76■□□□□ 0.75
COL4A4P53420 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.76■□□□□ 0.75
COL4A4P53420 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A4P53420 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL4A4P53420 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
COL4A4P53420 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.75■□□□□ 0.75
COL4A4P53420 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.75■□□□□ 0.75
COL4A4P53420 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL4A4P53420 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL4A4P53420 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.75■□□□□ 0.75
COL4A4P53420 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL4A4P53420 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 MTMR9LP-203ENST00000426597 1545 ntBASIC19.75■□□□□ 0.75
COL4A4P53420 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
COL4A4P53420 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.75■□□□□ 0.75
COL4A4P53420 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A4P53420 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.75■□□□□ 0.75
COL4A4P53420 AL139424.1-201ENST00000607572 797 ntBASIC19.75■□□□□ 0.75
COL4A4P53420 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
COL4A4P53420 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.75■□□□□ 0.75
COL4A4P53420 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL4A4P53420 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.74■□□□□ 0.75
COL4A4P53420 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.74■□□□□ 0.75
COL4A4P53420 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.74■□□□□ 0.75
COL4A4P53420 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.74■□□□□ 0.75
COL4A4P53420 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.74■□□□□ 0.75
COL4A4P53420 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.74■□□□□ 0.75
COL4A4P53420 AC009065.1-201ENST00000564055 1225 ntBASIC19.74■□□□□ 0.75
COL4A4P53420 AL355385.1-201ENST00000606123 409 ntBASIC19.74■□□□□ 0.75
COL4A4P53420 AC055717.3-201ENST00000622967 595 ntBASIC19.74■□□□□ 0.75
COL4A4P53420 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A4P53420 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 KRT8P7-201ENST00000533003 1432 ntBASIC19.73■□□□□ 0.75
COL4A4P53420 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 AC098831.1-202ENST00000438821 336 ntBASIC19.73■□□□□ 0.75
COL4A4P53420 MINOS1P3-201ENST00000457048 203 ntBASIC19.73■□□□□ 0.75
COL4A4P53420 RN7SL606P-201ENST00000472779 293 ntBASIC19.73■□□□□ 0.75
COL4A4P53420 IGHV3-22-201ENST00000520721 359 ntBASIC19.73■□□□□ 0.75
COL4A4P53420 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms