Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
COL2A1P02458 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.59■■□□□ 1.05
COL2A1P02458 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.59■■□□□ 1.05
COL2A1P02458 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
COL2A1P02458 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL2A1P02458 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.58■■□□□ 1.05
COL2A1P02458 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL2A1P02458 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.58■■□□□ 1.05
COL2A1P02458 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.58■■□□□ 1.05
COL2A1P02458 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.58■■□□□ 1.05
COL2A1P02458 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.58■■□□□ 1.05
COL2A1P02458 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL2A1P02458 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL2A1P02458 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL2A1P02458 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.58■■□□□ 1.04
COL2A1P02458 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.58■■□□□ 1.04
COL2A1P02458 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 MINOS1P3-201ENST00000457048 203 ntBASIC21.58■■□□□ 1.04
COL2A1P02458 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.58■■□□□ 1.04
COL2A1P02458 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.58■■□□□ 1.04
COL2A1P02458 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
COL2A1P02458 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.58■■□□□ 1.04
COL2A1P02458 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.58■■□□□ 1.04
COL2A1P02458 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21.58■■□□□ 1.04
COL2A1P02458 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.58■■□□□ 1.04
COL2A1P02458 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 TP73-AS1-207ENST00000624167 988 ntBASIC21.58■■□□□ 1.04
COL2A1P02458 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL2A1P02458 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL2A1P02458 AC073130.3-201ENST00000624389 2278 ntBASIC21.57■■□□□ 1.04
COL2A1P02458 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.57■■□□□ 1.04
COL2A1P02458 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL2A1P02458 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.57■■□□□ 1.04
COL2A1P02458 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL2A1P02458 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL2A1P02458 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL2A1P02458 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL2A1P02458 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.57■■□□□ 1.04
COL2A1P02458 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL2A1P02458 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
COL2A1P02458 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
COL2A1P02458 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.57■■□□□ 1.04
COL2A1P02458 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
COL2A1P02458 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
COL2A1P02458 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.57■■□□□ 1.04
COL2A1P02458 AC009154.2-201ENST00000621177 724 ntBASIC21.57■■□□□ 1.04
COL2A1P02458 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.57■■□□□ 1.04
COL2A1P02458 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.57■■□□□ 1.04
COL2A1P02458 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
COL2A1P02458 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.56■■□□□ 1.04
COL2A1P02458 MRPL3P1-201ENST00000400109 1033 ntBASIC21.56■■□□□ 1.04
COL2A1P02458 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.56■■□□□ 1.04
COL2A1P02458 AC096582.2-201ENST00000510860 516 ntBASIC21.56■■□□□ 1.04
COL2A1P02458 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
COL2A1P02458 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
COL2A1P02458 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL2A1P02458 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.56■■□□□ 1.04
COL2A1P02458 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
COL2A1P02458 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.55■■□□□ 1.04
COL2A1P02458 AF238378.1-201ENST00000526806 358 ntBASIC21.55■■□□□ 1.04
COL2A1P02458 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.55■■□□□ 1.04
COL2A1P02458 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.55■■□□□ 1.04
COL2A1P02458 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
COL2A1P02458 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL2A1P02458 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
COL2A1P02458 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.54■■□□□ 1.04
COL2A1P02458 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL2A1P02458 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL2A1P02458 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms