Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
USP42Q9H9J4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP42Q9H9J4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
USP42Q9H9J4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP42Q9H9J4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
USP42Q9H9J4 GUSBP12-201ENST00000513727 720 ntBASIC23.52■■□□□ 1.36
USP42Q9H9J4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
USP42Q9H9J4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC23.52■■□□□ 1.36
USP42Q9H9J4 AF228730.7-201ENST00000641842 219 ntBASIC23.52■■□□□ 1.36
USP42Q9H9J4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
USP42Q9H9J4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 KRT8P32-201ENST00000512863 1461 ntBASIC23.51■■□□□ 1.35
USP42Q9H9J4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 IL9RP2-201ENST00000423948 1312 ntBASIC23.51■■□□□ 1.35
USP42Q9H9J4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 MIR574-201ENST00000385209 96 ntBASIC23.51■■□□□ 1.35
USP42Q9H9J4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC23.51■■□□□ 1.35
USP42Q9H9J4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP42Q9H9J4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 AC034236.2-201ENST00000606662 1610 ntBASIC23.5■■□□□ 1.35
USP42Q9H9J4 AC006333.2-201ENST00000607957 2099 ntBASIC23.5■■□□□ 1.35
USP42Q9H9J4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 AP001005.1-201ENST00000571755 1248 ntBASIC23.5■■□□□ 1.35
USP42Q9H9J4 AC024563.2-201ENST00000603282 481 ntBASIC23.5■■□□□ 1.35
USP42Q9H9J4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 AC117500.6-201ENST00000624871 588 ntBASIC23.5■■□□□ 1.35
USP42Q9H9J4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP42Q9H9J4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
USP42Q9H9J4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
USP42Q9H9J4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
USP42Q9H9J4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC23.49■■□□□ 1.35
USP42Q9H9J4 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
USP42Q9H9J4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC23.49■■□□□ 1.35
USP42Q9H9J4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
USP42Q9H9J4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP42Q9H9J4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP42Q9H9J4 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP42Q9H9J4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
USP42Q9H9J4 VENTXP7-201ENST00000475503 772 ntBASIC23.49■■□□□ 1.35
USP42Q9H9J4 SLC25A1P1-201ENST00000528351 927 ntBASIC23.49■■□□□ 1.35
USP42Q9H9J4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC23.49■■□□□ 1.35
USP42Q9H9J4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC23.49■■□□□ 1.35
USP42Q9H9J4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP42Q9H9J4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USP42Q9H9J4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USP42Q9H9J4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 ABR-217ENST00000572441 563 ntTSL 4 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USP42Q9H9J4 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USP42Q9H9J4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.48■■□□□ 1.35
USP42Q9H9J4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USP42Q9H9J4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USP42Q9H9J4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC23.47■■□□□ 1.35
USP42Q9H9J4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms