Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 LINC01521-201ENST00000504184 1943 ntBASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SLC44A3Q8N4M1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 MIR940-201ENST00000401276 94 ntBASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 AC018712.1-201ENST00000455767 687 ntBASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 AC139887.3-201ENST00000568585 713 ntBASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 AL049840.3-201ENST00000602669 611 ntBASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 AC114341.1-201ENST00000618070 349 ntBASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.94■□□□□ 0.62
SLC44A3Q8N4M1 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 AC096582.2-201ENST00000510860 516 ntBASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SLC44A3Q8N4M1 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms