Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A4P53420 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.81■□□□□ 0.76
COL4A4P53420 AF186996.4-201ENST00000467186 377 ntBASIC19.81■□□□□ 0.76
COL4A4P53420 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A4P53420 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.81■□□□□ 0.76
COL4A4P53420 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
COL4A4P53420 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.81■□□□□ 0.76
COL4A4P53420 AL049840.3-201ENST00000602669 611 ntBASIC19.81■□□□□ 0.76
COL4A4P53420 AC064862.7-201ENST00000604520 867 ntBASIC19.81■□□□□ 0.76
COL4A4P53420 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.81■□□□□ 0.76
COL4A4P53420 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A4P53420 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A4P53420 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A4P53420 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A4P53420 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A4P53420 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
COL4A4P53420 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
COL4A4P53420 AC096582.2-201ENST00000510860 516 ntBASIC19.81■□□□□ 0.76
COL4A4P53420 AC139887.3-201ENST00000568585 713 ntBASIC19.81■□□□□ 0.76
COL4A4P53420 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A4P53420 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A4P53420 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.81■□□□□ 0.76
COL4A4P53420 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A4P53420 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 FEM1AP3-201ENST00000403722 1741 ntBASIC19.8■□□□□ 0.76
COL4A4P53420 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.8■□□□□ 0.76
COL4A4P53420 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.8■□□□□ 0.76
COL4A4P53420 RCC2P3-201ENST00000418112 1537 ntBASIC19.8■□□□□ 0.76
COL4A4P53420 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.8■□□□□ 0.76
COL4A4P53420 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.8■□□□□ 0.76
COL4A4P53420 AC145285.3-201ENST00000564603 959 ntBASIC19.8■□□□□ 0.76
COL4A4P53420 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.8■□□□□ 0.76
COL4A4P53420 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.8■□□□□ 0.76
COL4A4P53420 AC005332.3-201ENST00000589904 676 ntBASIC19.8■□□□□ 0.76
COL4A4P53420 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.8■□□□□ 0.76
COL4A4P53420 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC19.8■□□□□ 0.76
COL4A4P53420 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A4P53420 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL4A4P53420 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.79■□□□□ 0.76
COL4A4P53420 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 PMS2P2-201ENST00000425039 1128 ntBASIC19.79■□□□□ 0.76
COL4A4P53420 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.79■□□□□ 0.76
COL4A4P53420 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.79■□□□□ 0.76
COL4A4P53420 AC005336.2-201ENST00000593183 939 ntBASIC19.79■□□□□ 0.76
COL4A4P53420 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.79■□□□□ 0.76
COL4A4P53420 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
COL4A4P53420 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.79■□□□□ 0.76
COL4A4P53420 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.79■□□□□ 0.76
COL4A4P53420 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.79■□□□□ 0.76
COL4A4P53420 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A4P53420 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A4P53420 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.78■□□□□ 0.76
COL4A4P53420 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.78■□□□□ 0.76
COL4A4P53420 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.78■□□□□ 0.76
COL4A4P53420 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.78■□□□□ 0.76
COL4A4P53420 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
COL4A4P53420 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL4A4P53420 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A4P53420 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL4A4P53420 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A4P53420 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A4P53420 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.78■□□□□ 0.76
COL4A4P53420 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
COL4A4P53420 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL4A4P53420 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A4P53420 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.78■□□□□ 0.76
COL4A4P53420 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.78■□□□□ 0.76
COL4A4P53420 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A4P53420 PMS2P7-201ENST00000506558 1336 ntBASIC19.77■□□□□ 0.76
COL4A4P53420 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms