Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.45■□□□□ 0.38
RFX3P48380 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.45■□□□□ 0.38
RFX3P48380 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.45■□□□□ 0.38
RFX3P48380 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
RFX3P48380 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 CROCCP1-201ENST00000426910 5675 ntBASIC17.45■□□□□ 0.38
RFX3P48380 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
RFX3P48380 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX3P48380 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
RFX3P48380 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 AC079598.2-202ENST00000546624 1451 ntBASIC17.44■□□□□ 0.38
RFX3P48380 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RFX3P48380 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.44■□□□□ 0.38
RFX3P48380 AC096733.2-201ENST00000609937 1394 ntBASIC17.44■□□□□ 0.38
RFX3P48380 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RFX3P48380 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.44■□□□□ 0.38
RFX3P48380 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.44■□□□□ 0.38
RFX3P48380 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RFX3P48380 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
RFX3P48380 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.44■□□□□ 0.38
RFX3P48380 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.43■□□□□ 0.38
RFX3P48380 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.43■□□□□ 0.38
RFX3P48380 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 AC083906.6-201ENST00000641366 219 ntBASIC17.43■□□□□ 0.38
RFX3P48380 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
RFX3P48380 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
RFX3P48380 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.43■□□□□ 0.38
RFX3P48380 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
RFX3P48380 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.43■□□□□ 0.38
RFX3P48380 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RFX3P48380 AL512353.2-201ENST00000448759 1962 ntBASIC17.42■□□□□ 0.38
RFX3P48380 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.42■□□□□ 0.38
RFX3P48380 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
RFX3P48380 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
RFX3P48380 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX3P48380 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.42■□□□□ 0.38
RFX3P48380 RCC2P3-201ENST00000418112 1537 ntBASIC17.42■□□□□ 0.38
RFX3P48380 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.41■□□□□ 0.38
RFX3P48380 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.41■□□□□ 0.38
RFX3P48380 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.41■□□□□ 0.38
RFX3P48380 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RFX3P48380 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX3P48380 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX3P48380 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX3P48380 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.41■□□□□ 0.38
RFX3P48380 KRT8P3-201ENST00000519669 1449 ntBASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms