Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC24.44■■□□□ 1.5
COL18A1P39060 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 AC012640.2-201ENST00000561606 901 ntBASIC24.44■■□□□ 1.5
COL18A1P39060 AC034105.1-201ENST00000563488 319 ntBASIC24.44■■□□□ 1.5
COL18A1P39060 FAM215A-202ENST00000632077 792 ntBASIC24.44■■□□□ 1.5
COL18A1P39060 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
COL18A1P39060 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 TP73-AS1-210ENST00000637775 1455 ntBASIC24.43■■□□□ 1.5
COL18A1P39060 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL18A1P39060 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL18A1P39060 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL18A1P39060 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL18A1P39060 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL18A1P39060 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
COL18A1P39060 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC24.43■■□□□ 1.5
COL18A1P39060 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC24.43■■□□□ 1.5
COL18A1P39060 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL18A1P39060 TERC-201ENST00000602385 541 ntBASIC24.43■■□□□ 1.5
COL18A1P39060 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL18A1P39060 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC24.43■■□□□ 1.5
COL18A1P39060 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC24.43■■□□□ 1.5
COL18A1P39060 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL18A1P39060 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC24.43■■□□□ 1.5
COL18A1P39060 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC24.43■■□□□ 1.5
COL18A1P39060 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL18A1P39060 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL18A1P39060 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL18A1P39060 HIST2H3DP1-201ENST00000401004 416 ntBASIC24.42■■□□□ 1.5
COL18A1P39060 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL18A1P39060 AC132008.2-207ENST00000454517 770 ntBASIC24.42■■□□□ 1.5
COL18A1P39060 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL18A1P39060 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
COL18A1P39060 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL18A1P39060 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC24.42■■□□□ 1.5
COL18A1P39060 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL18A1P39060 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC24.42■■□□□ 1.5
COL18A1P39060 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL18A1P39060 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
COL18A1P39060 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC24.42■■□□□ 1.5
COL18A1P39060 AC092183.1-201ENST00000469884 875 ntBASIC24.42■■□□□ 1.5
COL18A1P39060 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC24.42■■□□□ 1.5
COL18A1P39060 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC24.42■■□□□ 1.5
COL18A1P39060 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC24.42■■□□□ 1.5
COL18A1P39060 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL18A1P39060 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC24.41■■□□□ 1.5
COL18A1P39060 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC24.41■■□□□ 1.5
COL18A1P39060 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC24.41■■□□□ 1.5
COL18A1P39060 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
COL18A1P39060 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 FABP5-202ENST00000396359 986 ntTSL 5 BASIC24.41■■□□□ 1.5
COL18A1P39060 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC24.41■■□□□ 1.5
COL18A1P39060 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC24.41■■□□□ 1.5
COL18A1P39060 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC24.41■■□□□ 1.5
COL18A1P39060 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC24.41■■□□□ 1.5
COL18A1P39060 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL18A1P39060 PMS2P7-201ENST00000506558 1336 ntBASIC24.41■■□□□ 1.5
COL18A1P39060 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.4■■□□□ 1.5
COL18A1P39060 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC24.4■■□□□ 1.5
COL18A1P39060 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC24.4■■□□□ 1.5
COL18A1P39060 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
COL18A1P39060 NMU-202ENST00000505262 693 ntTSL 3 BASIC24.4■■□□□ 1.5
COL18A1P39060 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 AC021087.4-201ENST00000563761 564 ntBASIC24.4■■□□□ 1.5
COL18A1P39060 MTDHP3-201ENST00000594186 672 ntBASIC24.4■■□□□ 1.5
COL18A1P39060 AC140113.2-201ENST00000604370 208 ntBASIC24.4■■□□□ 1.5
COL18A1P39060 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
COL18A1P39060 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
COL18A1P39060 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC24.4■■□□□ 1.5
COL18A1P39060 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL18A1P39060 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC24.4■■□□□ 1.5
COL18A1P39060 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
COL18A1P39060 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL18A1P39060 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
COL18A1P39060 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL18A1P39060 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL18A1P39060 CD63-204ENST00000546939 779 ntTSL 3 BASIC24.39■■□□□ 1.5
COL18A1P39060 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL18A1P39060 AC116407.3-201ENST00000623905 1129 ntBASIC24.39■■□□□ 1.5
COL18A1P39060 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL18A1P39060 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.39■■□□□ 1.5
COL18A1P39060 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL18A1P39060 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms