Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL5A1P20908 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A1P20908 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.77■□□□□ 0.44
COL5A1P20908 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A1P20908 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL5A1P20908 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A1P20908 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
COL5A1P20908 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL5A1P20908 SLC25A24-204ENST00000569674 2357 ntBASIC17.77■□□□□ 0.43
COL5A1P20908 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.77■□□□□ 0.43
COL5A1P20908 IRX1P1-201ENST00000438849 1838 ntBASIC17.77■□□□□ 0.43
COL5A1P20908 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL5A1P20908 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
COL5A1P20908 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.77■□□□□ 0.43
COL5A1P20908 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
COL5A1P20908 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.77■□□□□ 0.43
COL5A1P20908 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.77■□□□□ 0.43
COL5A1P20908 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.77■□□□□ 0.43
COL5A1P20908 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.77■□□□□ 0.43
COL5A1P20908 AC148477.8-201ENST00000624298 468 ntBASIC17.77■□□□□ 0.43
COL5A1P20908 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL5A1P20908 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.77■□□□□ 0.43
COL5A1P20908 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.76■□□□□ 0.43
COL5A1P20908 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
COL5A1P20908 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
COL5A1P20908 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
COL5A1P20908 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
COL5A1P20908 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.76■□□□□ 0.43
COL5A1P20908 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.76■□□□□ 0.43
COL5A1P20908 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL5A1P20908 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL5A1P20908 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.76■□□□□ 0.43
COL5A1P20908 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.76■□□□□ 0.43
COL5A1P20908 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 AC093484.2-201ENST00000580996 2166 ntBASIC17.76■□□□□ 0.43
COL5A1P20908 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.76■□□□□ 0.43
COL5A1P20908 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.76■□□□□ 0.43
COL5A1P20908 AC141586.3-201ENST00000562166 1838 ntBASIC17.76■□□□□ 0.43
COL5A1P20908 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
COL5A1P20908 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A1P20908 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL5A1P20908 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A1P20908 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A1P20908 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL5A1P20908 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A1P20908 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A1P20908 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A1P20908 AC106730.1-201ENST00000566722 1090 ntBASIC17.75■□□□□ 0.43
COL5A1P20908 AC114341.1-201ENST00000618070 349 ntBASIC17.75■□□□□ 0.43
COL5A1P20908 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.75■□□□□ 0.43
COL5A1P20908 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A1P20908 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A1P20908 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A1P20908 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.75■□□□□ 0.43
COL5A1P20908 AC139887.3-201ENST00000568585 713 ntBASIC17.75■□□□□ 0.43
COL5A1P20908 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A1P20908 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A1P20908 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
COL5A1P20908 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
COL5A1P20908 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
COL5A1P20908 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.74■□□□□ 0.43
COL5A1P20908 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.74■□□□□ 0.43
COL5A1P20908 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.74■□□□□ 0.43
COL5A1P20908 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.74■□□□□ 0.43
COL5A1P20908 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 AL357033.4-201ENST00000617703 1807 ntBASIC17.74■□□□□ 0.43
COL5A1P20908 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.74■□□□□ 0.43
COL5A1P20908 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A1P20908 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
COL5A1P20908 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms