Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 LINC01521-201ENST00000504184 1943 ntBASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CSB-PGBD3P0DP91 KRT8P50-201ENST00000562022 1438 ntBASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 THAP5-204ENST00000438865 868 ntTSL 2 BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 KRT18P58-201ENST00000527480 1120 ntBASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 AC092865.5-201ENST00000545435 363 ntBASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 AC008608.2-201ENST00000606089 416 ntBASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CSB-PGBD3P0DP91 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 AC132008.2-207ENST00000454517 770 ntBASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 POLD2P1-201ENST00000511220 997 ntBASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 AC114341.1-201ENST00000618070 349 ntBASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
CSB-PGBD3P0DP91 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 AC125437.2-201ENST00000625180 2167 ntBASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CSB-PGBD3P0DP91 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 AL357033.4-201ENST00000617703 1807 ntBASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 AC243591.1-201ENST00000452967 1364 ntBASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC24.49■■□□□ 1.51
CSB-PGBD3P0DP91 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 MIR940-201ENST00000401276 94 ntBASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms