Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC85CA6NKD9 AL358472.5-202ENST00000641448 1267 ntBASIC20.48■□□□□ 0.87
CCDC85CA6NKD9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC85CA6NKD9 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC85CA6NKD9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 AL024507.2-201ENST00000606070 2574 ntBASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC85CA6NKD9 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 HNRNPFP1-201ENST00000391730 1133 ntBASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 AC006557.2-201ENST00000592985 1240 ntBASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC85CA6NKD9 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 RCC2P3-201ENST00000418112 1537 ntBASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 FAM58CP-201ENST00000435741 640 ntBASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 ACTG1P14-201ENST00000446382 1122 ntBASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 AC136632.2-201ENST00000512891 861 ntBASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 MIR4751-201ENST00000578027 74 ntBASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCDC85CA6NKD9 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 AC004461.1-201ENST00000412461 403 ntBASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 KRT18P27-201ENST00000427733 1299 ntBASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 LINC02560-201ENST00000596379 459 ntBASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 AC104417.2-201ENST00000562989 1793 ntBASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC85CA6NKD9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC85CA6NKD9 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC85CA6NKD9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC85CA6NKD9 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC85CA6NKD9 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC85CA6NKD9 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC85CA6NKD9 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
CCDC85CA6NKD9 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC85CA6NKD9 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms