Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMA1Q9UHB6 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMA1Q9UHB6 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMA1Q9UHB6 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMA1Q9UHB6 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LIMA1Q9UHB6 REXO1L9P-201ENST00000604264 2108 ntBASIC20.32■□□□□ 0.84
LIMA1Q9UHB6 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIMA1Q9UHB6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 AP000593.1-201ENST00000393668 712 ntBASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 AL023284.2-201ENST00000405850 579 ntBASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMA1Q9UHB6 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 FSCN1P1-201ENST00000568912 1481 ntBASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMA1Q9UHB6 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 AC134043.2-201ENST00000624206 2238 ntBASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 GPAT2P1-201ENST00000444924 1672 ntBASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMA1Q9UHB6 GNAS-203ENST00000306120 1878 ntBASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 AC096733.2-201ENST00000609937 1394 ntBASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMA1Q9UHB6 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms