Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.89■■□□□ 1.1
DDX4Q9NQI0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 AC104819.1-201ENST00000504587 486 ntBASIC21.89■■□□□ 1.09
DDX4Q9NQI0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 AC138894.3-201ENST00000603787 634 ntBASIC21.89■■□□□ 1.09
DDX4Q9NQI0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.89■■□□□ 1.09
DDX4Q9NQI0 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 KRT89P-201ENST00000620027 1478 ntBASIC21.89■■□□□ 1.09
DDX4Q9NQI0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX4Q9NQI0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 AC079781.3-201ENST00000449110 356 ntBASIC21.88■■□□□ 1.09
DDX4Q9NQI0 KRT17P6-201ENST00000453795 1220 ntBASIC21.88■■□□□ 1.09
DDX4Q9NQI0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 AC091304.2-201ENST00000564639 760 ntBASIC21.88■■□□□ 1.09
DDX4Q9NQI0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 AC104692.2-201ENST00000603054 253 ntBASIC21.88■■□□□ 1.09
DDX4Q9NQI0 AL031008.1-201ENST00000619963 541 ntBASIC21.88■■□□□ 1.09
DDX4Q9NQI0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX4Q9NQI0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 AC009078.2-202ENST00000463353 338 ntBASIC21.87■■□□□ 1.09
DDX4Q9NQI0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 AC009065.1-201ENST00000564055 1225 ntBASIC21.87■■□□□ 1.09
DDX4Q9NQI0 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 AC004263.2-201ENST00000617183 678 ntBASIC21.87■■□□□ 1.09
DDX4Q9NQI0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX4Q9NQI0 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 AP000593.1-201ENST00000393668 712 ntBASIC21.86■■□□□ 1.09
DDX4Q9NQI0 FAAHP1-202ENST00000446499 1238 ntBASIC21.86■■□□□ 1.09
DDX4Q9NQI0 AL121772.3-201ENST00000610840 674 ntBASIC21.86■■□□□ 1.09
DDX4Q9NQI0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
DDX4Q9NQI0 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.85■■□□□ 1.09
DDX4Q9NQI0 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms