Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 TREX1-205ENST00000625293 1783 ntBASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 AC243591.1-201ENST00000452967 1364 ntBASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 MIR1233-2-201ENST00000408138 82 ntBASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 MIR1233-1-201ENST00000408722 82 ntBASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 AC132008.2-207ENST00000454517 770 ntBASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 AL157384.1-201ENST00000445995 2473 ntBASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 PMS2P7-201ENST00000506558 1336 ntBASIC18.98■□□□□ 0.63
SLC44A3Q8N4M1 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 AC092183.1-201ENST00000469884 875 ntBASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 TERC-201ENST00000602385 541 ntBASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SLC44A3Q8N4M1 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 RPL13AP23-201ENST00000480739 586 ntBASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 AC008608.2-201ENST00000606089 416 ntBASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 AC112907.3-201ENST00000577781 2400 ntBASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SLC44A3Q8N4M1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms