Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 MIR3180-5-201ENST00000583743 153 ntBASIC20.12■□□□□ 0.81
VPS52Q8N1B4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 AC011498.5-201ENST00000592027 486 ntBASIC20.11■□□□□ 0.81
VPS52Q8N1B4 AC092329.2-201ENST00000598402 547 ntBASIC20.11■□□□□ 0.81
VPS52Q8N1B4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS52Q8N1B4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.1■□□□□ 0.81
VPS52Q8N1B4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS52Q8N1B4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 TSSC2-201ENST00000450217 709 ntBASIC20.09■□□□□ 0.81
VPS52Q8N1B4 BX276092.5-203ENST00000456199 560 ntBASIC20.09■□□□□ 0.81
VPS52Q8N1B4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 MIR3652-201ENST00000579335 131 ntBASIC20.09■□□□□ 0.81
VPS52Q8N1B4 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 AL121672.3-201ENST00000608644 468 ntBASIC20.09■□□□□ 0.81
VPS52Q8N1B4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS52Q8N1B4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS52Q8N1B4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms