Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AC093525.10-201ENST00000625130 1569 ntBASIC16.86■□□□□ 0.29
SSX4O60224 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.86■□□□□ 0.29
SSX4O60224 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SSX4O60224 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.86■□□□□ 0.29
SSX4O60224 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.86■□□□□ 0.29
SSX4O60224 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
SSX4O60224 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.86■□□□□ 0.29
SSX4O60224 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.86■□□□□ 0.29
SSX4O60224 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.86■□□□□ 0.29
SSX4O60224 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.86■□□□□ 0.29
SSX4O60224 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SSX4O60224 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SSX4O60224 Z98044.1-201ENST00000632503 1764 ntBASIC16.86■□□□□ 0.29
SSX4O60224 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SSX4O60224 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.85■□□□□ 0.29
SSX4O60224 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SSX4O60224 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 AC080080.1-201ENST00000625121 2420 ntBASIC16.85■□□□□ 0.29
SSX4O60224 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.85■□□□□ 0.29
SSX4O60224 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.85■□□□□ 0.29
SSX4O60224 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.85■□□□□ 0.29
SSX4O60224 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.85■□□□□ 0.29
SSX4O60224 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.85■□□□□ 0.29
SSX4O60224 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.85■□□□□ 0.29
SSX4O60224 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
SSX4O60224 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SSX4O60224 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.85■□□□□ 0.29
SSX4O60224 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.85■□□□□ 0.29
SSX4O60224 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SSX4O60224 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.85■□□□□ 0.29
SSX4O60224 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SSX4O60224 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SSX4O60224 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.84■□□□□ 0.29
SSX4O60224 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.84■□□□□ 0.29
SSX4O60224 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.84■□□□□ 0.29
SSX4O60224 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.84■□□□□ 0.29
SSX4O60224 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.84■□□□□ 0.29
SSX4O60224 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.84■□□□□ 0.29
SSX4O60224 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.84■□□□□ 0.29
SSX4O60224 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.84■□□□□ 0.29
SSX4O60224 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.84■□□□□ 0.29
SSX4O60224 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SSX4O60224 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SSX4O60224 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.84■□□□□ 0.29
SSX4O60224 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 ABALON-201ENST00000629058 1903 ntBASIC16.84■□□□□ 0.29
SSX4O60224 AC008764.6-201ENST00000595909 2069 ntBASIC16.84■□□□□ 0.29
SSX4O60224 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.84■□□□□ 0.29
SSX4O60224 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.84■□□□□ 0.29
SSX4O60224 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms