Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
RPL39P62891 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.17□□□□□ -0.3
RPL39P62891 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC13.17□□□□□ -0.3
RPL39P62891 BX276092.2-201ENST00000417668 665 ntBASIC13.17□□□□□ -0.3
RPL39P62891 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC13.17□□□□□ -0.3
RPL39P62891 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC13.17□□□□□ -0.3
RPL39P62891 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC13.17□□□□□ -0.3
RPL39P62891 PLD4-205ENST00000553861 667 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC13.17□□□□□ -0.3
RPL39P62891 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RPL39P62891 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
RPL39P62891 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC13.17□□□□□ -0.3
RPL39P62891 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC13.17□□□□□ -0.3
RPL39P62891 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPL39P62891 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
RPL39P62891 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 CEP83-AS1-201ENST00000623122 2482 ntBASIC13.16□□□□□ -0.3
RPL39P62891 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC13.16□□□□□ -0.3
RPL39P62891 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 TSPY23P-201ENST00000440136 739 ntBASIC13.16□□□□□ -0.3
RPL39P62891 NME6-213ENST00000451657 871 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 OR2A1-AS1-201ENST00000462305 773 ntBASIC13.16□□□□□ -0.3
RPL39P62891 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC13.16□□□□□ -0.3
RPL39P62891 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC13.16□□□□□ -0.3
RPL39P62891 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC13.16□□□□□ -0.3
RPL39P62891 AC087623.3-201ENST00000607047 1098 ntBASIC13.16□□□□□ -0.3
RPL39P62891 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC13.16□□□□□ -0.3
RPL39P62891 MDK-213ENST00000617138 635 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC13.16□□□□□ -0.3
RPL39P62891 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC13.16□□□□□ -0.3
RPL39P62891 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.16□□□□□ -0.3
RPL39P62891 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC13.16□□□□□ -0.3
RPL39P62891 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC13.16□□□□□ -0.3
RPL39P62891 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPL39P62891 PCDHA12-202ENST00000613593 2588 ntBASIC13.16□□□□□ -0.3
RPL39P62891 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.16□□□□□ -0.3
RPL39P62891 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
RPL39P62891 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC13.15□□□□□ -0.3
RPL39P62891 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC13.15□□□□□ -0.3
RPL39P62891 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms