Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMK1P53667 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LIMK1P53667 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 Z83836.1-201ENST00000624605 1642 ntBASIC18.38■□□□□ 0.53
LIMK1P53667 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 GPAT2P1-201ENST00000444924 1672 ntBASIC18.38■□□□□ 0.53
LIMK1P53667 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
LIMK1P53667 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LIMK1P53667 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMK1P53667 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 HMGN1P19-201ENST00000436976 333 ntBASIC18.37■□□□□ 0.53
LIMK1P53667 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMK1P53667 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMK1P53667 AF238378.1-201ENST00000526806 358 ntBASIC18.37■□□□□ 0.53
LIMK1P53667 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMK1P53667 MIR3180-5-201ENST00000583743 153 ntBASIC18.37■□□□□ 0.53
LIMK1P53667 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.37■□□□□ 0.53
LIMK1P53667 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIMK1P53667 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 AC036111.1-201ENST00000533973 1582 ntBASIC18.37■□□□□ 0.53
LIMK1P53667 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMK1P53667 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMK1P53667 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMK1P53667 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
LIMK1P53667 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIMK1P53667 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LIMK1P53667 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
LIMK1P53667 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMK1P53667 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMK1P53667 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMK1P53667 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMK1P53667 AL031284.1-201ENST00000419297 478 ntBASIC18.36■□□□□ 0.53
LIMK1P53667 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.36■□□□□ 0.53
LIMK1P53667 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 AC093909.1-201ENST00000504731 1122 ntBASIC18.36■□□□□ 0.53
LIMK1P53667 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMK1P53667 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMK1P53667 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMK1P53667 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.36■□□□□ 0.53
LIMK1P53667 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.36■□□□□ 0.53
LIMK1P53667 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.36■□□□□ 0.53
LIMK1P53667 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.36■□□□□ 0.53
LIMK1P53667 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMK1P53667 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.36■□□□□ 0.53
LIMK1P53667 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LIMK1P53667 TP73-AS1-207ENST00000624167 988 ntBASIC18.36■□□□□ 0.53
LIMK1P53667 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
LIMK1P53667 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMK1P53667 AL158211.5-201ENST00000623583 2518 ntBASIC18.35■□□□□ 0.53
LIMK1P53667 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMK1P53667 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMK1P53667 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMK1P53667 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMK1P53667 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMK1P53667 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms