Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
MSH6P52701 CYP51A1P1-201ENST00000492267 1507 ntBASIC25.72■■□□□ 1.71
MSH6P52701 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MSH6P52701 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC25.71■■□□□ 1.71
MSH6P52701 COX5A-204ENST00000567270 579 ntTSL 3 BASIC25.71■■□□□ 1.71
MSH6P52701 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC25.71■■□□□ 1.71
MSH6P52701 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MSH6P52701 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
MSH6P52701 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
MSH6P52701 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
MSH6P52701 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
MSH6P52701 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
MSH6P52701 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
MSH6P52701 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
MSH6P52701 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
MSH6P52701 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.71
MSH6P52701 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC25.7■■□□□ 1.71
MSH6P52701 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.71
MSH6P52701 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC25.7■■□□□ 1.71
MSH6P52701 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC25.7■■□□□ 1.71
MSH6P52701 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.71
MSH6P52701 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
MSH6P52701 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
MSH6P52701 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
MSH6P52701 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
MSH6P52701 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
MSH6P52701 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
MSH6P52701 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
MSH6P52701 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC25.7■■□□□ 1.7
MSH6P52701 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC25.7■■□□□ 1.7
MSH6P52701 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MSH6P52701 AL157384.1-201ENST00000445995 2473 ntBASIC25.69■■□□□ 1.7
MSH6P52701 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC25.69■■□□□ 1.7
MSH6P52701 AC012640.2-201ENST00000561606 901 ntBASIC25.69■■□□□ 1.7
MSH6P52701 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC25.69■■□□□ 1.7
MSH6P52701 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC25.69■■□□□ 1.7
MSH6P52701 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC25.69■■□□□ 1.7
MSH6P52701 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC25.69■■□□□ 1.7
MSH6P52701 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MSH6P52701 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
MSH6P52701 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
MSH6P52701 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC25.69■■□□□ 1.7
MSH6P52701 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC25.69■■□□□ 1.7
MSH6P52701 AP006288.1-201ENST00000446065 395 ntBASIC25.69■■□□□ 1.7
MSH6P52701 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC25.69■■□□□ 1.7
MSH6P52701 RNA5SP416-201ENST00000516838 111 ntBASIC25.69■■□□□ 1.7
MSH6P52701 SART3-203ENST00000546611 1184 ntBASIC25.69■■□□□ 1.7
MSH6P52701 AC002347.1-201ENST00000569543 541 ntBASIC25.69■■□□□ 1.7
MSH6P52701 PNMT-203ENST00000581428 677 ntTSL 2 BASIC25.69■■□□□ 1.7
MSH6P52701 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC25.68■■□□□ 1.7
MSH6P52701 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC25.68■■□□□ 1.7
MSH6P52701 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
MSH6P52701 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
MSH6P52701 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC25.68■■□□□ 1.7
MSH6P52701 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC25.68■■□□□ 1.7
MSH6P52701 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC25.68■■□□□ 1.7
MSH6P52701 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC25.68■■□□□ 1.7
MSH6P52701 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC25.68■■□□□ 1.7
MSH6P52701 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC25.67■■□□□ 1.7
MSH6P52701 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC25.67■■□□□ 1.7
MSH6P52701 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
MSH6P52701 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH6P52701 AC112777.1-201ENST00000540175 1423 ntBASIC25.67■■□□□ 1.7
MSH6P52701 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH6P52701 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
MSH6P52701 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
MSH6P52701 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
MSH6P52701 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
MSH6P52701 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH6P52701 METTL21AP1-201ENST00000438852 635 ntBASIC25.67■■□□□ 1.7
MSH6P52701 CYMP-203ENST00000474680 1263 ntBASIC25.67■■□□□ 1.7
MSH6P52701 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC25.67■■□□□ 1.7
MSH6P52701 OR7E14P-202ENST00000530490 1290 ntBASIC25.67■■□□□ 1.7
MSH6P52701 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC25.67■■□□□ 1.7
MSH6P52701 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC25.67■■□□□ 1.7
MSH6P52701 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH6P52701 ANKRD20A8P-203ENST00000641373 517 ntBASIC25.67■■□□□ 1.7
MSH6P52701 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH6P52701 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
MSH6P52701 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC25.67■■□□□ 1.7
MSH6P52701 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
MSH6P52701 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
MSH6P52701 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC25.66■■□□□ 1.7
MSH6P52701 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
MSH6P52701 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH6P52701 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
MSH6P52701 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH6P52701 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
MSH6P52701 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC25.66■■□□□ 1.7
MSH6P52701 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms