Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.11■□□□□ 0.65
COL9A1P20849 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.11■□□□□ 0.65
COL9A1P20849 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 MIR4745-201ENST00000577608 62 ntBASIC19.11■□□□□ 0.65
COL9A1P20849 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
COL9A1P20849 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.11■□□□□ 0.65
COL9A1P20849 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL9A1P20849 AC012645.4-201ENST00000610691 1061 ntBASIC19.11■□□□□ 0.65
COL9A1P20849 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.11■□□□□ 0.65
COL9A1P20849 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.11■□□□□ 0.65
COL9A1P20849 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 AC036111.1-201ENST00000533973 1582 ntBASIC19.1■□□□□ 0.65
COL9A1P20849 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.1■□□□□ 0.65
COL9A1P20849 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.1■□□□□ 0.65
COL9A1P20849 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 AL023284.2-201ENST00000405850 579 ntBASIC19.1■□□□□ 0.65
COL9A1P20849 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 AC254562.1-201ENST00000417586 456 ntBASIC19.1■□□□□ 0.65
COL9A1P20849 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.1■□□□□ 0.65
COL9A1P20849 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.1■□□□□ 0.65
COL9A1P20849 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.1■□□□□ 0.65
COL9A1P20849 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.1■□□□□ 0.65
COL9A1P20849 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL9A1P20849 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.09■□□□□ 0.65
COL9A1P20849 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL9A1P20849 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.09■□□□□ 0.65
COL9A1P20849 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL9A1P20849 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.09■□□□□ 0.65
COL9A1P20849 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.09■□□□□ 0.65
COL9A1P20849 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.09■□□□□ 0.65
COL9A1P20849 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.09■□□□□ 0.65
COL9A1P20849 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.09■□□□□ 0.65
COL9A1P20849 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.09■□□□□ 0.65
COL9A1P20849 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.09■□□□□ 0.65
COL9A1P20849 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.09■□□□□ 0.65
COL9A1P20849 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.09■□□□□ 0.65
COL9A1P20849 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.09■□□□□ 0.65
COL9A1P20849 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.09■□□□□ 0.65
COL9A1P20849 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.09■□□□□ 0.65
COL9A1P20849 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
COL9A1P20849 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL9A1P20849 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.09■□□□□ 0.65
COL9A1P20849 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL9A1P20849 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.08■□□□□ 0.65
COL9A1P20849 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.08■□□□□ 0.65
COL9A1P20849 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.08■□□□□ 0.65
COL9A1P20849 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL9A1P20849 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL9A1P20849 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 AC023274.1-201ENST00000418278 595 ntBASIC19.08■□□□□ 0.64
COL9A1P20849 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
COL9A1P20849 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.08■□□□□ 0.64
COL9A1P20849 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.08■□□□□ 0.64
COL9A1P20849 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.08■□□□□ 0.64
COL9A1P20849 Z83851.2-201ENST00000609564 659 ntBASIC19.08■□□□□ 0.64
COL9A1P20849 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.08■□□□□ 0.64
COL9A1P20849 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms