Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CBX4O00257 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.02■□□□□ 0.64
CBX4O00257 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.02■□□□□ 0.64
CBX4O00257 Z98044.1-201ENST00000632503 1764 ntBASIC19.02■□□□□ 0.64
CBX4O00257 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.02■□□□□ 0.64
CBX4O00257 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.02■□□□□ 0.64
CBX4O00257 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.02■□□□□ 0.64
CBX4O00257 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.02■□□□□ 0.64
CBX4O00257 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.02■□□□□ 0.64
CBX4O00257 LINC01238-205ENST00000567549 1107 ntBASIC19.02■□□□□ 0.64
CBX4O00257 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.02■□□□□ 0.64
CBX4O00257 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.02■□□□□ 0.64
CBX4O00257 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.02■□□□□ 0.64
CBX4O00257 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CBX4O00257 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.02■□□□□ 0.64
CBX4O00257 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CBX4O00257 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.02■□□□□ 0.63
CBX4O00257 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.02■□□□□ 0.63
CBX4O00257 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CBX4O00257 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.02■□□□□ 0.63
CBX4O00257 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
CBX4O00257 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CBX4O00257 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CBX4O00257 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.01■□□□□ 0.63
CBX4O00257 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.01■□□□□ 0.63
CBX4O00257 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.01■□□□□ 0.63
CBX4O00257 AL359075.1-203ENST00000462729 1002 ntBASIC19.01■□□□□ 0.63
CBX4O00257 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.01■□□□□ 0.63
CBX4O00257 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.01■□□□□ 0.63
CBX4O00257 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
CBX4O00257 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.01■□□□□ 0.63
CBX4O00257 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CBX4O00257 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
CBX4O00257 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19■□□□□ 0.63
CBX4O00257 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19■□□□□ 0.63
CBX4O00257 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19■□□□□ 0.63
CBX4O00257 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19■□□□□ 0.63
CBX4O00257 HOMER2P1-201ENST00000455653 964 ntBASIC19■□□□□ 0.63
CBX4O00257 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19■□□□□ 0.63
CBX4O00257 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19■□□□□ 0.63
CBX4O00257 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19■□□□□ 0.63
CBX4O00257 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19■□□□□ 0.63
CBX4O00257 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19■□□□□ 0.63
CBX4O00257 AC020763.4-201ENST00000623414 4170 ntBASIC19■□□□□ 0.63
CBX4O00257 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19■□□□□ 0.63
CBX4O00257 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CBX4O00257 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.99■□□□□ 0.63
CBX4O00257 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CBX4O00257 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CBX4O00257 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.99■□□□□ 0.63
CBX4O00257 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms