Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 AL163051.1-201ENST00000569214 1512 ntBASIC32.21■■■□□ 2.75
CCDC88BA6NC98 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 NARF-204ENST00000390006 1766 ntTSL 2 BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 MIR5100-201ENST00000579544 119 ntBASIC32.2■■■□□ 2.75
CCDC88BA6NC98 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC32.2■■■□□ 2.75
CCDC88BA6NC98 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC32.2■■■□□ 2.74
CCDC88BA6NC98 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC32.2■■■□□ 2.74
CCDC88BA6NC98 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC32.2■■■□□ 2.74
CCDC88BA6NC98 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC32.2■■■□□ 2.74
CCDC88BA6NC98 UROS-202ENST00000368778 1556 ntTSL 2 BASIC32.2■■■□□ 2.74
CCDC88BA6NC98 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 AL158211.5-201ENST00000623583 2518 ntBASIC32.19■■■□□ 2.74
CCDC88BA6NC98 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC32.19■■■□□ 2.74
CCDC88BA6NC98 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 DDT-203ENST00000403754 569 ntTSL 3 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 USP48-205ENST00000421625 2818 ntTSL 2 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 DDT-206ENST00000430101 573 ntTSL 2 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 FGFR3P6-201ENST00000457012 610 ntBASIC32.18■■■□□ 2.74
CCDC88BA6NC98 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC88BA6NC98 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88BA6NC98 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 AC064862.7-201ENST00000604520 867 ntBASIC32.16■■■□□ 2.74
CCDC88BA6NC98 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC32.16■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms