Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.97■□□□□ 0.63
CHFRQ96EP1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.97■□□□□ 0.63
CHFRQ96EP1 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.97■□□□□ 0.63
CHFRQ96EP1 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.97■□□□□ 0.63
CHFRQ96EP1 KRT18P31-201ENST00000506277 1292 ntBASIC18.97■□□□□ 0.63
CHFRQ96EP1 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.97■□□□□ 0.63
CHFRQ96EP1 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.97■□□□□ 0.63
CHFRQ96EP1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.96■□□□□ 0.63
CHFRQ96EP1 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.96■□□□□ 0.63
CHFRQ96EP1 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.96■□□□□ 0.63
CHFRQ96EP1 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 FP475955.4-201ENST00000623131 1990 ntBASIC18.96■□□□□ 0.63
CHFRQ96EP1 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.96■□□□□ 0.63
CHFRQ96EP1 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
CHFRQ96EP1 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.96■□□□□ 0.63
CHFRQ96EP1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHFRQ96EP1 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 IGHGP-201ENST00000390555 1178 ntBASIC18.95■□□□□ 0.62
CHFRQ96EP1 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 MIR3180-4-201ENST00000582223 153 ntBASIC18.95■□□□□ 0.62
CHFRQ96EP1 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CHFRQ96EP1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHFRQ96EP1 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHFRQ96EP1 AC233702.3-201ENST00000578656 1387 ntBASIC18.94■□□□□ 0.62
CHFRQ96EP1 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHFRQ96EP1 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHFRQ96EP1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHFRQ96EP1 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHFRQ96EP1 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHFRQ96EP1 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 AC091304.2-201ENST00000564639 760 ntBASIC18.94■□□□□ 0.62
CHFRQ96EP1 AP005901.3-202ENST00000581653 237 ntBASIC18.94■□□□□ 0.62
CHFRQ96EP1 AC090616.6-201ENST00000582640 721 ntBASIC18.94■□□□□ 0.62
CHFRQ96EP1 GPR32P1-201ENST00000601788 811 ntBASIC18.94■□□□□ 0.62
CHFRQ96EP1 IGHV3-41-201ENST00000613121 348 ntBASIC18.94■□□□□ 0.62
CHFRQ96EP1 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.94■□□□□ 0.62
CHFRQ96EP1 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.94■□□□□ 0.62
CHFRQ96EP1 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 IGHV3-47-201ENST00000425060 335 ntBASIC18.93■□□□□ 0.62
CHFRQ96EP1 RN7SL606P-201ENST00000472779 293 ntBASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms