Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 PVRIG2P-201ENST00000435460 978 ntBASIC19.81■□□□□ 0.76
USP41Q3LFD5 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 RNF126P1-202ENST00000569893 925 ntBASIC19.81■□□□□ 0.76
USP41Q3LFD5 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
USP41Q3LFD5 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP41Q3LFD5 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 KRT18P1-202ENST00000452408 1331 ntBASIC19.8■□□□□ 0.76
USP41Q3LFD5 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP41Q3LFD5 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.8■□□□□ 0.76
USP41Q3LFD5 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 AC068587.9-201ENST00000641814 219 ntBASIC19.79■□□□□ 0.76
USP41Q3LFD5 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
USP41Q3LFD5 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP41Q3LFD5 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP41Q3LFD5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms