Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
COL4A4P53420 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
COL4A4P53420 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.93■□□□□ 0.78
COL4A4P53420 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.93■□□□□ 0.78
COL4A4P53420 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
COL4A4P53420 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
COL4A4P53420 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.93■□□□□ 0.78
COL4A4P53420 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.93■□□□□ 0.78
COL4A4P53420 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.93■□□□□ 0.78
COL4A4P53420 AC090616.6-201ENST00000582640 721 ntBASIC19.93■□□□□ 0.78
COL4A4P53420 AC148477.8-201ENST00000624298 468 ntBASIC19.93■□□□□ 0.78
COL4A4P53420 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A4P53420 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
COL4A4P53420 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.92■□□□□ 0.78
COL4A4P53420 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A4P53420 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A4P53420 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A4P53420 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A4P53420 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.92■□□□□ 0.78
COL4A4P53420 BX842568.4-201ENST00000421222 227 ntBASIC19.92■□□□□ 0.78
COL4A4P53420 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
COL4A4P53420 AC092183.1-201ENST00000469884 875 ntBASIC19.92■□□□□ 0.78
COL4A4P53420 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.92■□□□□ 0.78
COL4A4P53420 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
COL4A4P53420 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A4P53420 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
COL4A4P53420 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A4P53420 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.92■□□□□ 0.78
COL4A4P53420 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
COL4A4P53420 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A4P53420 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL4A4P53420 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A4P53420 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.92■□□□□ 0.78
COL4A4P53420 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
COL4A4P53420 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.91■□□□□ 0.78
COL4A4P53420 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.91■□□□□ 0.78
COL4A4P53420 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.91■□□□□ 0.78
COL4A4P53420 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.91■□□□□ 0.78
COL4A4P53420 AC008608.2-201ENST00000606089 416 ntBASIC19.91■□□□□ 0.78
COL4A4P53420 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.91■□□□□ 0.78
COL4A4P53420 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 AL032819.2-201ENST00000624543 2162 ntBASIC19.91■□□□□ 0.78
COL4A4P53420 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
COL4A4P53420 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.91■□□□□ 0.78
COL4A4P53420 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL4A4P53420 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.91■□□□□ 0.78
COL4A4P53420 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
COL4A4P53420 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A4P53420 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.91■□□□□ 0.78
COL4A4P53420 VENTXP7-201ENST00000475503 772 ntBASIC19.91■□□□□ 0.78
COL4A4P53420 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.91■□□□□ 0.78
COL4A4P53420 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.91■□□□□ 0.78
COL4A4P53420 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.91■□□□□ 0.78
COL4A4P53420 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.9■□□□□ 0.78
COL4A4P53420 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.9■□□□□ 0.78
COL4A4P53420 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.9■□□□□ 0.78
COL4A4P53420 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
COL4A4P53420 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 FAM220CP-201ENST00000395253 831 ntBASIC19.9■□□□□ 0.78
COL4A4P53420 AP003733.1-201ENST00000491725 852 ntBASIC19.9■□□□□ 0.78
COL4A4P53420 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.9■□□□□ 0.78
COL4A4P53420 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.9■□□□□ 0.78
COL4A4P53420 FP475955.4-201ENST00000623131 1990 ntBASIC19.9■□□□□ 0.78
COL4A4P53420 AC116562.4-201ENST00000641316 2276 ntBASIC19.9■□□□□ 0.78
COL4A4P53420 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A4P53420 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL4A4P53420 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
COL4A4P53420 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms