Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 AL390961.4-201ENST00000623958 2535 ntBASIC17.54■□□□□ 0.4
SOX3P41225 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX3P41225 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 AL137013.1-201ENST00000432946 1228 ntBASIC17.54■□□□□ 0.4
SOX3P41225 AC007663.1-201ENST00000438948 1240 ntBASIC17.54■□□□□ 0.4
SOX3P41225 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX3P41225 KRT18P57-201ENST00000443599 1254 ntBASIC17.54■□□□□ 0.4
SOX3P41225 CA15P1-201ENST00000481698 905 ntBASIC17.54■□□□□ 0.4
SOX3P41225 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 AL023803.3-201ENST00000615559 522 ntBASIC17.54■□□□□ 0.4
SOX3P41225 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
SOX3P41225 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX3P41225 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
SOX3P41225 AL161938.1-201ENST00000569833 2180 ntBASIC17.54■□□□□ 0.4
SOX3P41225 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX3P41225 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX3P41225 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
SOX3P41225 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.54■□□□□ 0.4
SOX3P41225 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 LTB4R2-202ENST00000528054 3092 ntBASIC17.53■□□□□ 0.4
SOX3P41225 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SOX3P41225 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.53■□□□□ 0.4
SOX3P41225 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 TERF1P1-201ENST00000311003 1181 ntBASIC17.53■□□□□ 0.4
SOX3P41225 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.53■□□□□ 0.4
SOX3P41225 TSPY17P-201ENST00000450329 467 ntBASIC17.53■□□□□ 0.4
SOX3P41225 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 AC092338.2-201ENST00000568827 1415 ntBASIC17.53■□□□□ 0.4
SOX3P41225 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX3P41225 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SOX3P41225 AL133373.2-201ENST00000623187 2828 ntBASIC17.53■□□□□ 0.4
SOX3P41225 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SOX3P41225 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.52■□□□□ 0.4
SOX3P41225 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.52■□□□□ 0.4
SOX3P41225 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SOX3P41225 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX3P41225 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX3P41225 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
SOX3P41225 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.52■□□□□ 0.4
SOX3P41225 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.52■□□□□ 0.4
SOX3P41225 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.52■□□□□ 0.4
SOX3P41225 TMPOP1-202ENST00000424642 1267 ntBASIC17.52■□□□□ 0.4
SOX3P41225 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.52■□□□□ 0.4
SOX3P41225 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.52■□□□□ 0.4
SOX3P41225 AC010203.1-204ENST00000548782 407 ntBASIC17.52■□□□□ 0.4
SOX3P41225 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SOX3P41225 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX3P41225 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SOX3P41225 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SOX3P41225 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SOX3P41225 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SOX3P41225 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SOX3P41225 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SOX3P41225 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.51■□□□□ 0.39
SOX3P41225 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SOX3P41225 AC006333.2-201ENST00000607957 2099 ntBASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms