Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CIITAP33076 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CIITAP33076 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CIITAP33076 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21■□□□□ 0.95
CIITAP33076 AL031133.1-201ENST00000406807 723 ntBASIC21■□□□□ 0.95
CIITAP33076 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21■□□□□ 0.95
CIITAP33076 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21■□□□□ 0.95
CIITAP33076 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CIITAP33076 AL157888.1-201ENST00000631930 593 ntBASIC21■□□□□ 0.95
CIITAP33076 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CIITAP33076 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21■□□□□ 0.95
CIITAP33076 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CIITAP33076 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.99■□□□□ 0.95
CIITAP33076 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CIITAP33076 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CIITAP33076 AC098818.2-201ENST00000564925 2320 ntBASIC20.99■□□□□ 0.95
CIITAP33076 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.99■□□□□ 0.95
CIITAP33076 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.99■□□□□ 0.95
CIITAP33076 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CIITAP33076 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CIITAP33076 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CIITAP33076 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CIITAP33076 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.98■□□□□ 0.95
CIITAP33076 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.98■□□□□ 0.95
CIITAP33076 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CIITAP33076 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 AL499627.1-201ENST00000569373 2188 ntBASIC20.98■□□□□ 0.95
CIITAP33076 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 AC112907.2-201ENST00000448639 330 ntBASIC20.98■□□□□ 0.95
CIITAP33076 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.98■□□□□ 0.95
CIITAP33076 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.98■□□□□ 0.95
CIITAP33076 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.98■□□□□ 0.95
CIITAP33076 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.98■□□□□ 0.95
CIITAP33076 AC079602.3-201ENST00000623931 403 ntBASIC20.98■□□□□ 0.95
CIITAP33076 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CIITAP33076 AL163051.1-201ENST00000569214 1512 ntBASIC20.98■□□□□ 0.95
CIITAP33076 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
CIITAP33076 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CIITAP33076 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CIITAP33076 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.97■□□□□ 0.95
CIITAP33076 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CIITAP33076 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CIITAP33076 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.97■□□□□ 0.95
CIITAP33076 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CIITAP33076 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.97■□□□□ 0.95
CIITAP33076 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.97■□□□□ 0.95
CIITAP33076 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CIITAP33076 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CIITAP33076 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CIITAP33076 MYLKP1-201ENST00000509077 1580 ntBASIC20.97■□□□□ 0.95
CIITAP33076 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CIITAP33076 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.96■□□□□ 0.95
CIITAP33076 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 HBZP1-201ENST00000354915 429 ntBASIC20.96■□□□□ 0.95
CIITAP33076 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 AL671277.2-201ENST00000458060 996 ntBASIC20.96■□□□□ 0.95
CIITAP33076 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.96■□□□□ 0.95
CIITAP33076 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.96■□□□□ 0.95
CIITAP33076 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CIITAP33076 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.96■□□□□ 0.95
CIITAP33076 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CIITAP33076 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.96■□□□□ 0.95
CIITAP33076 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CIITAP33076 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CIITAP33076 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CIITAP33076 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CIITAP33076 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CIITAP33076 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.95■□□□□ 0.94
CIITAP33076 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CIITAP33076 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CIITAP33076 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CIITAP33076 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.95■□□□□ 0.94
CIITAP33076 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms