Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL9A1P20849 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL9A1P20849 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL9A1P20849 GPAT2P1-201ENST00000444924 1672 ntBASIC19.15■□□□□ 0.66
COL9A1P20849 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL9A1P20849 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.15■□□□□ 0.66
COL9A1P20849 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.15■□□□□ 0.66
COL9A1P20849 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.15■□□□□ 0.66
COL9A1P20849 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.15■□□□□ 0.66
COL9A1P20849 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.15■□□□□ 0.66
COL9A1P20849 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.15■□□□□ 0.66
COL9A1P20849 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL9A1P20849 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
COL9A1P20849 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.14■□□□□ 0.66
COL9A1P20849 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.14■□□□□ 0.65
COL9A1P20849 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.14■□□□□ 0.65
COL9A1P20849 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.14■□□□□ 0.65
COL9A1P20849 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.14■□□□□ 0.65
COL9A1P20849 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 HNRNPDP1-201ENST00000439535 754 ntBASIC19.14■□□□□ 0.65
COL9A1P20849 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.14■□□□□ 0.65
COL9A1P20849 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.14■□□□□ 0.65
COL9A1P20849 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.14■□□□□ 0.65
COL9A1P20849 AC008608.2-201ENST00000606089 416 ntBASIC19.14■□□□□ 0.65
COL9A1P20849 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.14■□□□□ 0.65
COL9A1P20849 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.14■□□□□ 0.65
COL9A1P20849 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.14■□□□□ 0.65
COL9A1P20849 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.14■□□□□ 0.65
COL9A1P20849 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
COL9A1P20849 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL9A1P20849 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
COL9A1P20849 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.13■□□□□ 0.65
COL9A1P20849 AC015922.1-201ENST00000421102 1152 ntBASIC19.13■□□□□ 0.65
COL9A1P20849 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.13■□□□□ 0.65
COL9A1P20849 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL9A1P20849 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.13■□□□□ 0.65
COL9A1P20849 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.13■□□□□ 0.65
COL9A1P20849 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.13■□□□□ 0.65
COL9A1P20849 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.13■□□□□ 0.65
COL9A1P20849 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
COL9A1P20849 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
COL9A1P20849 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.13■□□□□ 0.65
COL9A1P20849 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
COL9A1P20849 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 NSUN5P1-202ENST00000421140 1535 ntBASIC19.13■□□□□ 0.65
COL9A1P20849 NSUN5P2-203ENST00000457352 1529 ntBASIC19.13■□□□□ 0.65
COL9A1P20849 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC19.13■□□□□ 0.65
COL9A1P20849 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.13■□□□□ 0.65
COL9A1P20849 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL9A1P20849 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.12■□□□□ 0.65
COL9A1P20849 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.12■□□□□ 0.65
COL9A1P20849 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.12■□□□□ 0.65
COL9A1P20849 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
COL9A1P20849 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.12■□□□□ 0.65
COL9A1P20849 RNA5SP416-201ENST00000516838 111 ntBASIC19.12■□□□□ 0.65
COL9A1P20849 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.12■□□□□ 0.65
COL9A1P20849 AC024243.1-201ENST00000609234 778 ntBASIC19.12■□□□□ 0.65
COL9A1P20849 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL9A1P20849 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
COL9A1P20849 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 Z83836.1-201ENST00000624605 1642 ntBASIC19.11■□□□□ 0.65
COL9A1P20849 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL9A1P20849 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms