Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 NSUN5P1-202ENST00000421140 1535 ntBASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 NSUN5P2-203ENST00000457352 1529 ntBASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 AC141586.3-201ENST00000562166 1838 ntBASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC28.82■■■□□ 2.2
CDK11AQ9UQ88 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 CDV3-207ENST00000508481 661 ntTSL 3 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 AC125437.2-201ENST00000625180 2167 ntBASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC28.81■■■□□ 2.2
CDK11AQ9UQ88 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 LINC01521-201ENST00000504184 1943 ntBASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC28.8■■■□□ 2.2
CDK11AQ9UQ88 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 AKR1C7P-201ENST00000305623 895 ntBASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 MRPL3P1-201ENST00000400109 1033 ntBASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 SAPCD2P3-201ENST00000455031 850 ntBASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 AP005901.3-202ENST00000581653 237 ntBASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 REXO1L6P-202ENST00000619970 1078 ntBASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CDK11AQ9UQ88 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 ABR-217ENST00000572441 563 ntTSL 4 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC28.78■■■□□ 2.2
CDK11AQ9UQ88 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 CALM1-205ENST00000553542 877 ntTSL 5 BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC28.77■■■□□ 2.2
CDK11AQ9UQ88 AC023511.2-201ENST00000618803 211 ntBASIC28.77■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms