Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC008556.1-201ENST00000610908 2040 ntBASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 UNC93B6-202ENST00000528242 690 ntBASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 AC009237.14-201ENST00000609975 1594 ntBASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 CENPM-204ENST00000402420 688 ntTSL 5 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 WDR53-203ENST00000429115 683 ntTSL 2 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 RNA5SP416-201ENST00000516838 111 ntBASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC28.23■■■□□ 2.11
COL17A1Q9UMD9 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
COL17A1Q9UMD9 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC28.22■■■□□ 2.11
COL17A1Q9UMD9 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
COL17A1Q9UMD9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
COL17A1Q9UMD9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC28.22■■■□□ 2.11
COL17A1Q9UMD9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
COL17A1Q9UMD9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
COL17A1Q9UMD9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 ALG1L5P-201ENST00000482043 771 ntBASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 PRR29-209ENST00000582540 967 ntTSL 2 BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC28.21■■■□□ 2.11
COL17A1Q9UMD9 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC28.2■■■□□ 2.11
COL17A1Q9UMD9 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 AC008735.5-201ENST00000623544 497 ntBASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL17A1Q9UMD9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 ZNF815P-204ENST00000434898 1737 ntBASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 MIR770-201ENST00000390219 98 ntBASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 MTDHP5-201ENST00000598980 586 ntBASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL17A1Q9UMD9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 TP73-AS1-210ENST00000637775 1455 ntBASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 AL645939.2-201ENST00000427340 991 ntBASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL17A1Q9UMD9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
COL17A1Q9UMD9 OR7E14P-202ENST00000530490 1290 ntBASIC28.17■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms