Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
CHMP1AQ9HD42 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CHMP1AQ9HD42 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CHMP1AQ9HD42 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CHMP1AQ9HD42 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CHMP1AQ9HD42 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CHMP1AQ9HD42 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.08■□□□□ 0.17
CHMP1AQ9HD42 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.17
CHMP1AQ9HD42 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 AC120498.8-201ENST00000614275 531 ntBASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 AL121829.2-201ENST00000620908 328 ntBASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CHMP1AQ9HD42 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHMP1AQ9HD42 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
CHMP1AQ9HD42 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms